Gene omics information

Query gene ID At5g65685
Gene name soluble glycogen synthase-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g65685836698soluble glycogen synthase-relatedF:starch synthase activity;P:unknown;C:chloroplast;BPOAMS.X.H.G.
0.2726.2At3g60810825252unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPS.X.H.G.
0.2624.4At2g46580819270pyridoxine 5'-phosphate oxidase-relatedF:FMN binding, pyridoxamine-phosphate oxidase activity;P:pyridoxine biosynthetic process;C:cellular_component unknown;OBMFPS.X.H.G.
0.2624.4At5g05800830465unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFS.X.H.G.
0.2522.6At4g30310829154ribitol kinase, putativeF:carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor;P:carbohydrate metabolic process;C:chloroplast;BOMFAPS.X.H.G.
0.2420.7At1g31410840031putrescine-binding periplasmic protein-relatedF:transporter activity;P:transport;C:chloroplast;BOPAS.X.H.G.
0.2115.8At1g65410842852ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)member of NAP subfamilyS.X.H.G.
0.2014.4At1g752108438585' nucleotidase family proteinF:5'-nucleotidase activity;P:biological_process unknown;C:chloroplast;MPBOS.X.H.G.
0.1912.7At2g33255817888catalytic/ hydrolase/ phosphoglycolate phosphataseF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast;BOAFPMS.X.H.G.
0.1811.4At2g32040817764integral membrane transporter family proteinThe At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
23.699.6GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.599.6E-ATMX-35-raw-cel-1574334832
16.299.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
14.999.4GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.099.4E-MEXP-509-raw-cel-829148738
13.099.4E-MEXP-509-raw-cel-829148772
13.099.4E-MEXP-509-raw-cel-829148842
12.299.3E-ATMX-35-raw-cel-1574334816
12.199.3E-MEXP-1443-raw-cel-1581869515
11.299.2E-MEXP-509-raw-cel-829148877
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At4g13610826994MEE57 (maternal effect embryo arrest 57)F:protein binding, DNA binding, DNA (cytosine-5-)-methyltransferase activity;P:embryonic development ending in seed dormancy, DNA methylation;C:nucleus;BOMPAFVC.G.S.X.
0.027e-136At5g49170834976unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.023e+034At5g37240833698unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e+034At5g15580831411LNG1 (LONGIFOLIA1)Encodes LONGIFOLIA1 (LNG1). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG1 homologue LNG2 (At3g02170) has similar function.C.G.S.X.
0.013e+034At5g48560834912basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBVC.G.S.X.
0.013e+034At5g39440833940SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.013e+034At3g18100821335MYB4R1 (myb domain protein 4R1)Member of the R2R3 transcription factor gene family.C.G.S.X.
0.023e+034At3g18260821354reticulon family protein (RTNLB9)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFC.G.S.X.
0.013e+034At3g05050819667protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxHgAffx.9341.1.S1_atCB379160--8e-1At4g28060cytochrome c oxidase subunit 6b, putativeC.G.S.X.
0.021e+034Hordeum vulgareContig2285_atContig2285--3e-11At2g32720CB5-B (CYTOCHROME B5 ISOFORM B)C.G.S.X.
0.056e-963Oryza sativaOs02g0807100AK119364.1--7e-9At5g65685soluble glycogen synthase-relatedC.G.S.X.
0.169e-29129Populus trichocarpaPtpAffx.207427.1.S1_atpmrna14740hypothetical protein-5e-29At5g65685soluble glycogen synthase-relatedC.G.S.X.
0.021e+132Triticum aestivumTaAffx.71165.1.S1_atBE492853--6e+0At5g01380transcription factorC.G.S.X.
0.045e-238Vitis vinifera1615390_atBQ792520starch synthase V-4e-3At5g65685soluble glycogen synthase-relatedC.G.S.X.
0.022e+130Zea maysZm.9758.1.A1_atBM332963--4e+0At4g39190unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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