Gene omics information

Query gene ID At5g65250
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8793.5At5g65250836650unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BMPOS.X.H.G.
0.5267.4At2g42070818807ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23)F:hydrolase activity, FAD diphosphatase activity;P:unknown;C:chloroplast;BOMAPFS.X.H.G.
0.4963.5At1g19800838568TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate.S.X.H.G.
0.4659.8At3g57990824968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBS.X.H.G.
0.4558.3At5g06580830546FAD linked oxidase family proteinEncodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo.S.X.H.G.
0.4355.3At5g04710830349aspartyl aminopeptidase, putativeF:aminopeptidase activity, zinc ion binding;P:proteolysis;C:chloroplast, vacuole;BOFMPAS.X.H.G.
0.4253.9At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPS.X.H.G.
0.4253.9At1g80600844399WIN1 (HOPW1-1-INTERACTING 1)Encodes HopW1-1-Interacting protein 1 (WIN1). Interacts with the P. syringae effector HopW1-1. WIN1 is a putative acetylornithine transaminase. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).S.X.H.G.
0.4050.8At3g20320821576TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process.S.X.H.G.
0.4050.8At4g33350829471chloroplast inner membrane import protein Tic22, putativeF:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope;BPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
13.099.4GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
8.399.0GSM133266RIKEN-GODA4B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
7.898.9GSM7718200h pgm (Col-0) mutant replicate BGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
7.198.8GSM133268RIKEN-GODA5B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.998.7GSM133276RIKEN-GODA9B-6GSE5696AtGenExpress: Effect of brassinosteroids in seedlings
6.998.7GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
6.998.7GSM131817Quick_A64_3-12hr_Rep3_ATH1GSE5638Systemic signalling of irradiance and CO2 concentration in Arabidopsis (Treatment 3: Ambient CO2 and Low Light)
6.898.7GSM7718820h pgm (Col-0) mutant replicate AGSE3424Diurnal gene expression in rosette leaves of the phosphoglucomutase mutant (Col-0)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.023e-240At2g19570816476CDA1 (CYTIDINE DEAMINASE 1)Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.C.G.S.X.
0.011e-138At2g17440816250leucine-rich repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MPBOFVAC.G.S.X.
0.014e-136At4g29920829115heat shock protein-relatedF:protein binding;P:protein metabolic process;C:chloroplast;BOPMFAC.G.S.X.
0.014e-136At3g13460820548ECT2Physically interacts with CIPK1.C.G.S.X.
0.014e-136At2g01170814645BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-757Glycine maxGma.5049.1.S1_atBI425927--8e-8At5g65250unknown proteinC.G.S.X.
0.033e+032Hordeum vulgareContig19171_atContig19171--2e+0At4g24974-C.G.S.X.
0.141e-965Oryza sativaOs08g04848009636.m03800-Conserved hypothetical protein5e-10At5g65250unknown proteinC.G.S.X.
0.162e-1377Populus trichocarpaPtpAffx.207099.1.S1_atpmrna14073hypothetical protein-1e-13At5g65250unknown proteinC.G.S.X.
0.035e-136Triticum aestivumTaAffx.24705.1.S1_atCA714006--2e-1At5g65250unknown proteinC.G.S.X.
0.079e-650Vitis vinifera1608788_atCF414358hypothetical protein LOC100244969-2e-5At5g65250unknown proteinC.G.S.X.
0.033e+032Zea maysZm.16508.2.A1_atCF01844960S ribosomal protein L39 /// ribosomal protein L39-1e-15At4g3198560S ribosomal protein L39 (RPL39C)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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