CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g65170

Gene name VQ motif-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g65170 836641 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB S.X. H.G.
0.40 50.8 At1g21220 3766770 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.25 22.6 At2g18780 816393 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.24 20.7 At2g16090 816106 zinc finger protein-related F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPV S.X. H.G.
0.23 19.3 At1g64620 842770 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;OPMFB S.X. H.G.
0.14 6.8 At2g44630 819071 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPBOAF S.X. H.G.
0.11 4.1 At2g17975 816309 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOF S.X. H.G.
0.11 4.1 At3g53440 824512 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.11 4.1 At5g47400 834787 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;MPO S.X. H.G.
0.10 3.4 At1g54200 841860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
178.8 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
173.4 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.3 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.2 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
100.2 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
96.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
91.3 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
84.1 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
81.6 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 7e-16 85 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF C.G. S.X.
0.06 1e-11 71 At1g35830 840485 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVB C.G. S.X.
0.05 4e-8 59 At4g15120 827178 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA C.G. S.X.
0.02 1e-4 48 At1g51640 841589 ATEXO70G2 (exocyst subunit EXO70 family protein G2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.03 2e-3 44 At5g54470 835535 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POFM C.G. S.X.
0.01 9e-3 42 At5g54910 835582 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAV C.G. S.X.
0.03 9e-3 42 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM C.G. S.X.
0.04 9e-3 42 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV C.G. S.X.
0.01 9e-3 42 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-4 46 Glycine max GmaAffx.24936.1.S1_at CA939048 - - 2e-4 At5g65170 VQ motif-containing protein C.G. S.X.
0.03 3e-1 36 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.03 7e-2 40 Oryza sativa Os03g0387300 AK107546.1 - VQ domain containing protein 1e-1 At1g35830 VQ motif-containing protein C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.802.2.S1_at CV272843 - - 1e-3 At5g40070 - C.G. S.X.
0.04 4e-2 40 Triticum aestivum Ta.21273.1.S1_s_at CA615208 - - 4e-1 At2g42460 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1620038_at BQ796012 - - 2e+0 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.03 6e-2 38 Zea mays Zm.9441.1.A1_at AY105453.1 hypothetical protein LOC100278105 - 1e+0 At2g33790 AGP30 (ARABINOGALACTAN PROTEIN30) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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