Gene omics information

Query gene ID At5g65160
Gene name tetratricopeptide repeat (TPR)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g65160836639tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAS.X.H.G.
0.4050.8At5g13150831154ATEXO70C1 (exocyst subunit EXO70 family protein C1)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
0.3338.1At2g37980818376unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMS.X.H.G.
0.103.4At5g01700831695protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVBS.X.H.G.
0.030.6At5g13990831247ATEXO70C2 (exocyst subunit EXO70 family protein C2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
123.999.9GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
116.499.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
110.999.9GSM142751MJ001_ATH1_A2-jones-WT2GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
107.999.9GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
99.199.9GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
95.499.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
93.699.9GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
84.499.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.099.9GSM265430Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
71.299.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.484e-129462At5g10090830873tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPAC.G.S.X.
0.012e-138At3g58210824990meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBAC.G.S.X.
0.019e-136At4g29060829027emb2726 (embryo defective 2726)F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVC.G.S.X.
0.019e-136At4g22550828351phosphatidic acid phosphatase-related / PAP2-relatedF:catalytic activity;P:biological_process unknown;C:membrane;BMOPAFC.G.S.X.
0.004e+034Atcg01280--hypothetical proteinC.G.S.X.
0.004e+034Atcg00860--Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally.C.G.S.X.
0.014e+034At5g07240830615IQD24 (IQ-domain 24)F:calmodulin binding;P:biological_process unknown;C:unknown;PMOBC.G.S.X.
0.014e+034At5g54710835560ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;MOPBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-138Glycine maxHgAffx.18636.1.S1_atCA940544--2e-1At3g48450nitrate-responsive NOI protein, putativeC.G.S.X.
0.012e+034Hordeum vulgareContig17315_atContig17315--1e+0At5g19875unknown proteinC.G.S.X.
0.024e-138Oryza sativaOs10g0378300AK059907.1-The start codon is not identified.3e-29At3g28860ABCB19C.G.S.X.
0.134e-22107Populus trichocarpaPtpAffx.205184.1.S1_atpmrna10267hypothetical protein-8e-37At5g10090tetratricopeptide repeat (TPR)-containing proteinC.G.S.X.
0.026e-240Triticum aestivumTa.6069.2.S1_a_atCA654701--4e+0At2g28910CXIP4 (CAX INTERACTING PROTEIN 4)C.G.S.X.
0.021e+034Vitis vinifera1622582_atCF513452hypothetical protein LOC100264542-3e-1At5g4562026S proteasome regulatory subunit, putative (RPN9)C.G.S.X.
0.022e+034Zea maysZm.13020.1.A1_atCA401496hypothetical protein LOC100278482-5e+0At4g30430TET9 (TETRASPANIN9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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