CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g65160

Gene name tetratricopeptide repeat (TPR)-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g65160 836639 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPA S.X. H.G.
0.40 50.8 At5g13150 831154 ATEXO70C1 (exocyst subunit EXO70 family protein C1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.33 38.1 At2g37980 818376 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM S.X. H.G.
0.10 3.4 At5g01700 831695 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFVB S.X. H.G.
0.03 0.6 At5g13990 831247 ATEXO70C2 (exocyst subunit EXO70 family protein C2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
123.9 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
116.4 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
110.9 99.9 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
107.9 99.9 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
99.1 99.9 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
95.4 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
93.6 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
84.4 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
74.0 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
71.2 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 4e-129 462 At5g10090 830873 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MOBFPA C.G. S.X.
0.01 2e-1 38 At3g58210 824990 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBA C.G. S.X.
0.01 9e-1 36 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV C.G. S.X.
0.01 9e-1 36 At4g22550 828351 phosphatidic acid phosphatase-related / PAP2-related F:catalytic activity;P:biological_process unknown;C:membrane;BMOPAF C.G. S.X.
0.00 4e+0 34 Atcg01280 - - hypothetical protein C.G. S.X.
0.00 4e+0 34 Atcg00860 - - Encodes an unknown protein. This gene is regulated by AtSIG6 transcriptionally. C.G. S.X.
0.01 4e+0 34 At5g07240 830615 IQD24 (IQ-domain 24) F:calmodulin binding;P:biological_process unknown;C:unknown;PMOB C.G. S.X.
0.01 4e+0 34 At5g54710 835560 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:endomembrane system;MOPBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max HgAffx.18636.1.S1_at CA940544 - - 2e-1 At3g48450 nitrate-responsive NOI protein, putative C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig17315_at Contig17315 - - 1e+0 At5g19875 unknown protein C.G. S.X.
0.02 4e-1 38 Oryza sativa Os10g0378300 AK059907.1 - The start codon is not identified. 3e-29 At3g28860 ABCB19 C.G. S.X.
0.13 4e-22 107 Populus trichocarpa PtpAffx.205184.1.S1_at pmrna10267 hypothetical protein - 8e-37 At5g10090 tetratricopeptide repeat (TPR)-containing protein C.G. S.X.
0.02 6e-2 40 Triticum aestivum Ta.6069.2.S1_a_at CA654701 - - 4e+0 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1622582_at CF513452 hypothetical protein LOC100264542 - 3e-1 At5g45620 26S proteasome regulatory subunit, putative (RPN9) C.G. S.X.
0.02 2e+0 34 Zea mays Zm.13020.1.A1_at CA401496 hypothetical protein LOC100278482 - 5e+0 At4g30430 TET9 (TETRASPANIN9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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