Gene omics information

Query gene ID At5g65050
Gene name AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g65050836629AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.S.X.H.G.
0.3338.1At3g03340821276UNE6 (unfertilized embryo sac 6)F:unknown;P:double fertilization forming a zygote and endosperm;C:unknown;MOFPBVAS.X.H.G.
0.2522.6At5g37370833711ATSRL1encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.S.X.H.G.
0.2522.6At5g67530836889peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPAS.X.H.G.
0.2014.4At3g54170824584ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A.S.X.H.G.
0.1811.4At3g57300824897INO80 (INO80 ORTHOLOG)Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.S.X.H.G.
0.103.4At2g14120815898dynamin-like protein 2b (ADL2b)Encodes a dynamin related protein. DRPs are self-assembling GTPasse involved in fission and fusion of membranes. DRP3B functions in mitochondrion and peroxisome fission in combination with DRP3A.S.X.H.G.
0.103.4At4g24740828576AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
85.199.9GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
38.399.8GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
32.099.7GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.599.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.499.7E-MEXP-1443-raw-cel-1581869573
28.199.7E-MEXP-1443-raw-cel-1581869515
25.299.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
23.599.6GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
22.699.6GSM291119root - 21% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
22.299.6GSM311281Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.883e-180630At5g65060836630MAF3 (MADS AFFECTING FLOWERING 3)MADS domain protein - flowering regulator that is closely related to FLCC.G.S.X.
0.555e-55214At5g65080836632MAF5 (MADS AFFECTING FLOWERING 5)Is upregulated during vernalization and regulates flowering time. Encodes MADS-domain protein. Two variants encoding proteins of 198 and 184 amino acids have been reported.C.G.S.X.
0.567e-45180At5g65070836631MAF4 (MADS AFFECTING FLOWERING 4)Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e+032Glycine maxHgAffx.5533.1.S1_atCD747892--3e+0At5g65050AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)C.G.S.X.
0.035e-134Hordeum vulgareHU14M07u_s_atHU14M07u--1e+0At5g65050AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)C.G.S.X.
0.045e-136Oryza sativaOsAffx.4301.1.S1_at---0C.G.S.X.
0.072e+034Populus trichocarpaPtpAffx.162863.1.S1_atBU882965hypothetical protein-1e-6At3g58780SHP1 (SHATTERPROOF 1)C.G.S.X.
0.051e+034Triticum aestivumTa.15064.1.S1_atCA688477--7e-1At5g65050AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)C.G.S.X.
0.055e-340Vitis vinifera1621420_atAY275713.1FUL-like protein-5e-38At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.033e-238Zea maysZm.487.1.S1_a_atAF181479.1silky1-8e-3At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010221Any process that stops, prevents or reduces the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures.
XGO:0009910Any process that stops, prevents or reduces the frequency, rate or extent of flower development.
XGO:0010048The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures.
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage