CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64905

Gene name PROPEP3 (Elicitor peptide 3 precursor)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g64905 836614 PROPEP3 (Elicitor peptide 3 precursor) F:molecular_function unknown;P:defense response, response to salicylic acid stimulus;C:cellular_component unknown;PM S.X. H.G.
0.51 66.3 At5g64890 836612 PROPEP2 (Elicitor peptide 2 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus, defense response, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;P S.X. H.G.
0.44 57.2 At1g61360 842430 S-locus lectin protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.42 53.9 At3g52450 824410 PUB22 (PLANT U-BOX 22) Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
0.40 50.8 At4g21390 827891 B120 F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVA S.X. H.G.
0.37 45.0 At5g57220 835828 CYP81F2 member of CYP81F, involved in glucosinolate metabolism. Mutants had impaired resistance to fungi. S.X. H.G.
0.37 45.0 At5g65600 836686 legume lectin family protein / protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.36 43.6 At3g54150 824582 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.36 43.6 At2g22880 816819 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.31 33.8 At3g59700 825139 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE) member of Receptor kinase-like protein family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
134.7 99.9 E-NASC-76-raw-cel-1359879132
127.1 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
109.9 99.9 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
104.2 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
104.0 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
93.9 99.9 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
88.1 99.9 E-MEXP-547-raw-cel-863346403
84.8 99.9 E-NASC-76-raw-cel-1359878951
81.3 99.9 GSM39212 RRE2_Chitin2 GSE2169 rre1 and rre2 mutants
78.5 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 1e-4 46 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P C.G. S.X.
0.01 1e-4 46 At1g74180 843758 AtRLP14 (Receptor Like Protein 14) F:protein binding;P:signal transduction;C:chloroplast;PMOBFAV C.G. S.X.
0.03 6e-4 44 At4g00830 827998 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.03 6e-4 44 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.04 6e-4 44 At1g66620 842980 seven in absentia (SINA) protein, putative F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MOFPBVA C.G. S.X.
0.04 6e-4 44 At1g02540 839516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFVBPA C.G. S.X.
0.01 6e-4 44 At1g67140 843034 SWEETIE (SWEETIE) F:binding;P:trehalose metabolic process, carbohydrate metabolic process, starch metabolic process;C:cytosol;MOBFPVA C.G. S.X.
0.02 2e-3 42 At5g19320 832052 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-3 42 Glycine max Gma.8797.1.A1_at BI969881 - - 4e-15 At3g13980 unknown protein C.G. S.X.
0.05 3e-4 44 Hordeum vulgare HVSMEl0003G02r2_at HVSMEl0003G02r2 - - 1e-3 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.07 1e-3 44 Oryza sativa Os09g0496000 9637.m02815 - - 2e-1 At3g06000 leucine-rich repeat family protein C.G. S.X.
0.07 8e-4 44 Populus trichocarpa PtpAffx.224051.1.S1_x_at pmrna42286 hypothetical protein - 6e-1 At3g46900 COPT2 C.G. S.X.
0.05 9e-3 40 Triticum aestivum TaAffx.110870.1.S1_at CA652605 - - 2e-2 At5g64905 PROPEP3 (Elicitor peptide 3 precursor) C.G. S.X.
0.06 1e-2 38 Vitis vinifera 1606519_at CB342417 hypothetical protein LOC100261732 - 2e-22 At5g56950 NAP1 C.G. S.X.
0.04 6e-2 36 Zea mays Zm.4415.1.A1_at BM080841 hypothetical protein LOC100274900 - 5e-3 At3g50550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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