CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64850

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.95 97.0 At5g64850 836608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P S.X. H.G.
0.23 19.3 At4g26860 828793 pyridoxal phosphate binding F:pyridoxal phosphate binding;P:biological_process unknown;C:unknown;OBMFPA S.X. H.G.
0.17 10.2 At5g64460 836567 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPBM S.X. H.G.
0.12 4.9 At2g31070 817659 TCP10 (TCP DOMAIN PROTEIN 10) TCP family protein involved in heterchronic regulation of leaf differentiation. S.X. H.G.
0.10 3.4 At5g02120 831799 OHP (ONE HELIX PROTEIN) Encodes a one helix protein homologous to cyanobacterial high-light inducible proteins. The protein is localized to the thylakoid membrane and its transcript is transiently induced by exposure to high light conditions. S.X. H.G.
0.09 2.8 At1g06040 837113 STO (SALT TOLERANCE) Encodes salt tolerance protein (STO) which confers salt tolerance to yeast cells. Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. STO co-localizes with COP1 and plays a role in light signaling. S.X. H.G.
0.06 1.4 At4g35450 829697 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. S.X. H.G.
0.04 0.9 At4g25050 828608 ACP4 (acyl carrier protein 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. S.X. H.G.
0.04 0.9 At1g60950 842386 FED A encodes a major leaf ferredoxin S.X. H.G.
0.03 0.6 At1g22140 838819 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.1 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
25.0 99.6 GSM131416 AtGen_6-8112_Woundingstress-Shoots-0.5h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
23.9 99.6 GSM131415 AtGen_6-8111_Woundingstress-Shoots-0.5h_Rep1 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
21.9 99.6 E-MEXP-1474-raw-cel-1593932673
20.1 99.6 GSM62699 arf6/arf6 ARF8/arf8 flowers_stage 11-12 GSE2848 Auxin Response Factor mediated flower gene expression
19.9 99.6 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.3 99.5 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.0 99.5 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
16.3 99.5 E-MEXP-1443-raw-cel-1581869573
16.0 99.5 GSM62696 Columbia flowers_stage 13-14 GSE2848 Auxin Response Factor mediated flower gene expression
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 6e-29 127 At5g09960 830857 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.04 3e-3 42 At5g62290 836350 nucleotide-sensitive chloride conductance regulator (ICln) family protein F:ion channel activity;P:cell volume homeostasis, chloride transport;C:cellular_component unknown;MPFO C.G. S.X.
0.02 1e-2 40 At5g60710 836192 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;BMOPFA C.G. S.X.
0.01 4e-2 38 At1g64255 2745850 SWIM zinc finger family protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e-1 36 At2g41620 818760 nucleoporin interacting component family protein F:molecular_function unknown;P:transport;C:nucleolus;MFPO C.G. S.X.
0.01 6e-1 34 At5g07390 830630 ATRBOHA (respiratory burst oxidase homolog A) F:calcium ion binding;P:defense response;C:intrinsic to plasma membrane;MFPOBA C.G. S.X.
0.02 6e-1 34 At4g15880 827269 ESD4 (EARLY IN SHORT DAYS 4) EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. Probably acts in the same pathway as NUA in affecting flowering time, vegetative and inflorescence development. C.G. S.X.
0.02 6e-1 34 At4g32710 3770575 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-2 38 Glycine max Gma.10696.1.S1_at BI970314 - - 1e-1 At5g64850 unknown protein C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HV_CEa0014H05r2_at HV_CEa0014H05r2 - - 3e+0 At5g64850 unknown protein C.G. S.X.
0.06 3e-1 36 Oryza sativa Os03g0169900 AK063222.1 - Conserved hypothetical protein 4e-1 At5g64850 unknown protein C.G. S.X.
0.12 6e-8 57 Populus trichocarpa PtpAffx.50349.1.A1_at CV269995 hypothetical protein - 1e-7 At5g64850 unknown protein C.G. S.X.
0.04 7e-1 34 Triticum aestivum Ta.9116.3.A1_at BG906296 - - 8e-1 At5g64850 unknown protein C.G. S.X.
0.07 8e-4 42 Vitis vinifera 1607233_at CF414238 hypothetical protein LOC100245593 - 5e-3 At5g64850 unknown protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.12148.1.S1_at BM351623 small nuclear ribonucleoprotein Sm D1 - 3e-8 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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