CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64690

Gene name neurofilament triplet H protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g64690 836590 neurofilament triplet H protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.77 88.0 At1g43630 840947 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.71 84.2 At3g22650 821836 CEG (CEGENDUO) F:molecular_function unknown;P:response to auxin stimulus, lateral root formation;C:cellular_component unknown;PO S.X. H.G.
0.67 81.6 At2g10970 815562 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.61 76.7 At3g02440 821154 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFB S.X. H.G.
0.61 76.7 At2g45610 819169 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BPOFMAV S.X. H.G.
0.58 73.8 At1g16360 838205 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein F:unknown;P:biological_process unknown;C:membrane;MOFP S.X. H.G.
0.51 66.3 At1g51260 841549 LPAT3 ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] S.X. H.G.
0.47 61.2 At3g12160 820393 RABA4D (RAB GTPASE HOMOLOG A4D) Encodes RABA4D, a member of the Arabidopsis RabA4 subfamily of Rab GTPase proteins. It is transported in exocytic vesicles to the apical tip of pollen tubes where it appears to promote tip growth. Proper localization of RabA4d depends on ROP1, RIC3, and RIC4 activity. S.X. H.G.
0.43 55.3 At1g51410 841566 cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
331.5 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
315.9 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
204.4 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
108.8 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.8 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
98.5 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
94.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.4 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
93.4 99.9 GSM106916 opr3_JA_22 hrs_Rep2 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
93.1 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-2 40 At1g50500 841472 HIT1 (HEAT-INTOLERANT 1) encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. C.G. S.X.
0.01 1e-1 38 At5g23490 832415 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF C.G. S.X.
0.01 1e-1 38 At4g10070 826598 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVA C.G. S.X.
0.01 1e-1 38 At2g35060 818071 KUP11 potassium transporter C.G. S.X.
0.01 1e-1 38 At1g09730 837501 Ulp1 protease family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 5e-1 36 At5g37720 833750 RNA and export factor-binding protein, putative F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MFPOBV C.G. S.X.
0.03 5e-1 36 At5g46900 834735 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-3 44 Glycine max HgAffx.8935.1.S1_at CB379566 - - 1e-3 At5g64690 neurofilament triplet H protein-related C.G. S.X.
0.04 6e-2 38 Hordeum vulgare rbaal0f10_s_at rbaal0f10 - - 2e+0 At5g02380 MT2B (METALLOTHIONEIN 2B) C.G. S.X.
0.03 2e-2 42 Oryza sativa Os01g0149800 CB096951 - Metallothionein-like protein type 2 2e-12 At3g09390 MT2A (METALLOTHIONEIN 2A) C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.69484.1.A1_at CV256779 hypothetical protein - 1e+0 At5g64690 neurofilament triplet H protein-related C.G. S.X.
0.04 1e-4 48 Triticum aestivum Ta.28108.1.S1_at CA619092 - - 1e-3 At3g09390 MT2A (METALLOTHIONEIN 2A) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619770_at BQ794062 hypothetical protein LOC100240944 - 2e-5 At3g62260 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 2e-1 36 Zea mays Zm.11773.2.A1_a_at CK347605 hypothetical protein LOC100277518 - 1e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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