CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64640

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.72 84.8 At5g64640 836585 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOM S.X. H.G.
0.66 80.1 At1g18150 838394 ATMPK8 ATMPK8, S.X. H.G.
0.65 79.6 At1g12750 837831 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA S.X. H.G.
0.64 78.9 At1g26130 839154 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:plasma membrane, chloroplast envelope;MBOFPAV S.X. H.G.
0.62 77.3 At3g24760 822074 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.62 77.3 At4g01960 828190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At3g01040 821312 GAUT13 (Galacturonosyltransferase 13) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.59 74.7 At1g04985 839352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.59 74.7 At5g58530 835966 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMOBF S.X. H.G.
0.58 73.8 At2g17530 816260 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.9 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
71.5 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.5 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.5 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.8 99.8 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
46.7 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
46.6 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
40.2 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.6 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.52 3e-53 210 At5g09760 830836 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, chloroplast, plant-type cell wall;PBFOM C.G. S.X.
0.02 6e-5 50 At3g06830 819867 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.03 1e-3 46 At3g10710 820240 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 4e-3 44 At3g05620 819728 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 4e-3 44 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 1e-2 42 At5g55590 835653 QRT1 (QUARTET 1) Encodes a protein with pectin methylesterase activity. No change in activity were detected in mutants defective in this gene, which was interpreted as a result of redundancy of product function with other pectin methylesterases. The gene product is required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation. C.G. S.X.
0.03 1e-2 42 At4g02330 828064 ATPMEPCRB F:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOM C.G. S.X.
0.03 1e-2 42 At1g53840 841821 ATPME1 encodes a pectin methylesterase C.G. S.X.
0.01 6e-2 40 At5g55500 835643 XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE) Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-5 52 Glycine max GmaAffx.14939.1.S1_at BQ628447 - - 3e-3 At5g09760 pectinesterase family protein C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig17009_at Contig17009 - - 5e+0 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) C.G. S.X.
0.02 1e-1 40 Oryza sativa Os06g0659500 AK058431.1 - Glutaredoxin 9e-2 At1g77370 glutaredoxin, putative C.G. S.X.
0.11 5e-6 54 Populus trichocarpa Ptp.2244.1.A1_s_at CV270349 hypothetical protein - 3e-6 At5g64640 pectinesterase family protein C.G. S.X.
0.02 9e-1 36 Triticum aestivum TaAffx.113234.1.S1_at CA617049 - - 1e+0 At3g15280 unknown protein C.G. S.X.
0.05 8e-11 67 Vitis vinifera 1608799_at BQ800204 hypothetical protein LOC100257530 - 2e-10 At5g64640 pectinesterase family protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.2263.1.A1_at AW330859 - - 7e-5 At2g43050 ATPMEPCRD C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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