CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64460

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g64460 836567 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPBM S.X. H.G.
0.38 46.7 At5g46800 834724 BOU (A BOUT DE SOUFFLE) Seedling lethal mutation; Mitochondrial Carnitine Acyl Carrier-Like Protein S.X. H.G.
0.38 46.7 At5g47840 834835 AMK2 (Adenosine monophosphate kinase) F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding, adenylate kinase activity, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast, chloroplast stroma;BOMFPA S.X. H.G.
0.35 41.6 At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). S.X. H.G.
0.33 38.1 At4g35450 829697 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. S.X. H.G.
0.33 38.1 At5g13120 831151 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;OBMFPAV S.X. H.G.
0.31 33.8 At2g21170 816652 TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes triosephosphate isomerase. S.X. H.G.
0.23 19.3 At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO S.X. H.G.
0.11 4.1 At1g20810 838672 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 99.4 E-MEXP-1443-raw-cel-1581869688
9.7 99.1 E-MEXP-1443-raw-cel-1581869632
9.6 99.1 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
8.4 99.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.0 98.9 E-MEXP-285-raw-cel-440782853
7.3 98.8 E-MEXP-285-raw-cel-440783091
7.2 98.8 Evans_2-9_col-aeq-ambient_ATH1
7.2 98.8 GSM142771 AM001_ATH1_Control GSE6168 Comparison of the transcript profile of the auxin resistant axr4 mutant and wild-type Col0
6.9 98.7 E-ATMX-33-raw-cel-1562596288
6.8 98.7 GSM133828 Walters_A-07-Kruger-ML1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 3e-11 69 At2g17280 816234 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;FOPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-7 56 Glycine max GmaAffx.37953.1.A1_at BU548755 - - 3e-7 At5g64460 - C.G. S.X.
0.16 5e-5 48 Hordeum vulgare Contig5132_at Contig5132 - - 2e-4 At1g58280 - C.G. S.X.
0.13 3e-6 54 Oryza sativa Os04g0102500 CR292872 - Phosphoglycerate mutase-like protein 3e-6 At5g64460 - C.G. S.X.
0.10 6e-4 46 Populus trichocarpa PtpAffx.201971.1.S1_at pmrna3940 hypothetical protein - 1e-7 At1g58280 - C.G. S.X.
0.10 2e-6 54 Triticum aestivum Ta.9338.2.S1_x_at CA614952 - - 4e-2 At1g58280 - C.G. S.X.
0.12 3e-5 48 Vitis vinifera 1608530_at CB971070 hypothetical protein LOC100265997 - 2e-4 At5g64460 - C.G. S.X.
0.15 5e-11 67 Zea mays Zm.3850.1.A1_at AI619409 phosphoglycerate mutase-like protein - 2e-10 At5g64460 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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