CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64410

Gene name OPT4 (OLIGOPEPTIDE TRANSPORTER 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g64410 836562 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) oligopeptide transporter S.X. H.G.
0.39 48.4 At1g79590 844297 SYP52 (SYNTAXIN OF PLANTS 52) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. S.X. H.G.
0.33 38.1 At1g09430 837466 ACLA-3 Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. S.X. H.G.
0.32 35.7 At2g15570 816050 thioredoxin M-type 3, chloroplast (TRX-M3) chloroplast protein similar to prokaryotic thioredoxin. S.X. H.G.
0.31 33.8 At1g59580 842248 ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) encodes a mitogen-activated kinase involved in innate immunity S.X. H.G.
0.31 33.8 At1g32410 840134 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;MFPO S.X. H.G.
0.26 24.4 At5g49720 835035 ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1) Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1. S.X. H.G.
0.25 22.6 At5g65430 836668 GRF8 (GENERAL REGULATORY FACTOR 8) member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1 S.X. H.G.
0.24 20.7 At1g70330 843369 ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) encodes an adenosine transporter that catalyze a proton-dependent adenosine transport. S.X. H.G.
0.24 20.7 At4g28770 828998 - F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
43.8 99.8 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
25.9 99.7 GSM142853 MG001_ATH1_A6-Torres-2N6 GSE6176 Impact of Type III effectors on plant defense responses
23.3 99.6 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
22.8 99.6 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
22.2 99.6 GSM128672 Underwood_1-27_hrpA-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.0 99.6 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
21.9 99.6 GSM142850 MG001_ATH1_A3-Torres-1N6 GSE6176 Impact of Type III effectors on plant defense responses
21.5 99.6 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
21.2 99.6 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
20.8 99.6 GSM131186 AtGen_D-19_2-PL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 8e-17 89 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.11 5e-12 73 At1g09930 837525 ATOPT2 oligopeptide transporter C.G. S.X.
0.06 2e-11 71 At5g55930 835691 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.05 1e-6 56 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter C.G. S.X.
0.03 1e-6 56 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter C.G. S.X.
0.05 7e-5 50 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter C.G. S.X.
0.05 1e-3 46 At5g53510 835433 ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9) oligopeptide transporter C.G. S.X.
0.02 3e-1 38 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-31 139 Glycine max GmaAffx.64151.1.S1_at BM887517 - - 2e-32 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig18906_at Contig18906 - - 2e+0 At3g27416 unknown protein C.G. S.X.
0.09 9e-6 54 Oryza sativa Os02g0695800 AK071310.1 - Oligopeptide transporter OPT superfamily protein 4e-6 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.40 5e-62 240 Populus trichocarpa Ptp.8110.1.S1_at CV227916 oligopeptide transporter OPT family - 2e-62 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.06 2e-8 61 Triticum aestivum Ta.8599.1.A1_at BQ162109 - - 2e-11 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.19 4e-25 115 Vitis vinifera 1613916_at CF404702 hypothetical protein LOC100250922 - 1e-24 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.01 2e+0 34 Zea mays Zm.12478.1.A1_at CF043347 - - 7e-2 At5g40630 ubiquitin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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