CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64370

Gene name BETA-UP (beta-ureidopropionase)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g64370 836558 BETA-UP (beta-ureidopropionase) PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine. S.X. H.G.
0.57 73.8 At2g26230 817163 uricase / urate oxidase / nodulin 35, putative F:urate oxidase activity;P:purine base metabolic process;C:peroxisome;BFMPOA S.X. H.G.
0.55 70.6 At3g56310 824798 alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:vacuole;MBFOP S.X. H.G.
0.54 69.5 At1g23440 838952 pyrrolidone-carboxylate peptidase family protein F:peptidase activity;P:proteolysis;C:cellular_component unknown;BAOPMF S.X. H.G.
0.51 66.3 At1g04440 839520 CKL13 (CASEIN KINASE LIKE 13) F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.44 57.2 At2g33630 817929 3-beta hydroxysteroid dehydrogenase/isomerase family protein F:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPV S.X. H.G.
0.44 57.2 At2g45330 819141 emb1067 (embryo defective 1067) F:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPV S.X. H.G.
0.41 52.4 At5g47200 834766 ATRAB1A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA S.X. H.G.
0.40 50.8 At1g09920 837524 TRAF-type zinc finger-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP S.X. H.G.
0.40 50.8 At4g05160 825864 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.8 99.6 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
19.2 99.6 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.9 99.5 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
16.8 99.5 GSM265422 Arabidopsis, root, longitudinal zone 3, standard conditions, rep1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
15.5 99.5 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
15.3 99.4 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.4 99.4 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.2 99.4 GSM265425 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.9 99.4 GSM265424 Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.7 99.4 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-1 36 At5g46580 834701 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.02 6e-1 36 At5g57655 835871 xylose isomerase family protein F:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMF C.G. S.X.
0.02 6e-1 36 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM C.G. S.X.
0.01 6e-1 36 At1g63490 842655 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:unknown;C:nucleus;MFOPB C.G. S.X.
0.03 2e+0 34 At5g63160 836437 BT1 (BTB AND TAZ DOMAIN PROTEIN 1) BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development. C.G. S.X.
0.01 2e+0 34 At4g26400 828746 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;PMOFVB C.G. S.X.
0.02 2e+0 34 At4g05170 825865 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 5e-67 256 Glycine max GmaAffx.93189.1.S1_at CF808914 - - 2e-67 At5g64370 BETA-UP (beta-ureidopropionase) C.G. S.X.
0.36 1e-49 196 Hordeum vulgare Contig7393_at Contig7393 - - 3e-49 At5g64370 BETA-UP (beta-ureidopropionase) C.G. S.X.
0.34 4e-56 220 Oryza sativa Os07g0485100 AK060443.1 - Nitrilase/cyanide hydratase and apolipoproteinN-acyltransferase domain containing protein 3e-56 At5g64370 BETA-UP (beta-ureidopropionase) C.G. S.X.
0.41 2e-97 357 Populus trichocarpa PtpAffx.95543.1.A1_at CV244514 hypothetical protein - 9e-98 At5g64370 BETA-UP (beta-ureidopropionase) C.G. S.X.
0.27 1e-39 165 Triticum aestivum Ta.14887.1.S1_at CK207420 - - 2e-39 At5g64370 BETA-UP (beta-ureidopropionase) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1616774_at CF568877 - - 4e+0 At5g42957 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.10435.1.S1_at BQ485073 - - 4e+0 At5g53340 galactosyltransferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006807 The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00240 Pyrimidine metabolism
00410 beta-Alanine metabolism
00770 Pantothenate and CoA biosynthesis
01100 Metabolic pathways
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