Gene omics information

Query gene ID At5g64370
Gene name BETA-UP (beta-ureidopropionase)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g64370836558BETA-UP (beta-ureidopropionase)PYD3 encodes a beta-ureidopropionase which, when expressed in E. coli, has been shown to convert beta-ureidopropionate into beta-alanine.S.X.H.G.
0.5773.8At2g26230817163uricase / urate oxidase / nodulin 35, putativeF:urate oxidase activity;P:purine base metabolic process;C:peroxisome;BFMPOAS.X.H.G.
0.5570.6At3g56310824798alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putativeF:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process, metabolic process, lactose catabolic process;C:vacuole;MBFOPS.X.H.G.
0.5469.5At1g23440838952pyrrolidone-carboxylate peptidase family proteinF:peptidase activity;P:proteolysis;C:cellular_component unknown;BAOPMFS.X.H.G.
0.5166.3At1g04440839520CKL13 (CASEIN KINASE LIKE 13)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPBFVAS.X.H.G.
0.4457.2At2g336308179293-beta hydroxysteroid dehydrogenase/isomerase family proteinF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, catalytic activity;P:steroid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMAFPVS.X.H.G.
0.4457.2At2g45330819141emb1067 (embryo defective 1067)F:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPVS.X.H.G.
0.4152.4At5g47200834766ATRAB1AF:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAS.X.H.G.
0.4050.8At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
0.4050.8At4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.899.6GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
19.299.6GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
18.999.5GSM265433Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
16.899.5GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
15.599.5GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
15.399.4GSM265412Arabidopsis, whole roots, -Fe, replicate 2GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.499.4GSM265413Arabidopsis, whole roots, -Fe, replicate 3GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
14.299.4GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.999.4GSM265424Arabidopsis, root, longitudinal zone 4, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
13.799.4GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-136At5g46580834701pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.026e-136At5g57655835871xylose isomerase family proteinF:xylose isomerase activity;P:carbohydrate metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPMFC.G.S.X.
0.026e-136At2g41480818746electron carrier/ heme binding / peroxidaseF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBMC.G.S.X.
0.016e-136At1g63490842655transcription factor jumonji (jmjC) domain-containing proteinF:transcription factor activity;P:unknown;C:nucleus;MFOPBC.G.S.X.
0.032e+034At5g63160836437BT1 (BTB AND TAZ DOMAIN PROTEIN 1)BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.C.G.S.X.
0.012e+034At4g26400828746zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:endomembrane system;PMOFVBC.G.S.X.
0.022e+034At4g05170825865DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFBOMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.485e-67256Glycine maxGmaAffx.93189.1.S1_atCF808914--2e-67At5g64370BETA-UP (beta-ureidopropionase)C.G.S.X.
0.361e-49196Hordeum vulgareContig7393_atContig7393--3e-49At5g64370BETA-UP (beta-ureidopropionase)C.G.S.X.
0.344e-56220Oryza sativaOs07g0485100AK060443.1-Nitrilase/cyanide hydratase and apolipoproteinN-acyltransferase domain containing protein3e-56At5g64370BETA-UP (beta-ureidopropionase)C.G.S.X.
0.412e-97357Populus trichocarpaPtpAffx.95543.1.A1_atCV244514hypothetical protein-9e-98At5g64370BETA-UP (beta-ureidopropionase)C.G.S.X.
0.271e-39165Triticum aestivumTa.14887.1.S1_atCK207420--2e-39At5g64370BETA-UP (beta-ureidopropionase)C.G.S.X.
0.027e-134Vitis vinifera1616774_atCF568877--4e+0At5g42957unknown proteinC.G.S.X.
0.021e+034Zea maysZm.10435.1.S1_atBQ485073--4e+0At5g53340galactosyltransferase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006807The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds; includes nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00240Link to KEGG PATHWAYPyrimidine metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00770Link to KEGG PATHWAYPantothenate and CoA biosynthesis
01100Link to KEGG PATHWAYMetabolic pathways
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