Gene omics information

Query gene ID At5g64270
Gene name splicing factor, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4152.4At5g64270836548splicing factor, putativeF:binding;P:mRNA processing;C:chloroplast;MFOBPAVS.X.H.G.
0.8089.8At3g11540820327SPY (SPINDLY)Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. SPY may be involved in reducing ROS accumulation in response to stress.S.X.H.G.
0.8089.8At4g05420825890DDB1A (DAMAGED DNA BINDING PROTEIN 1A)Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.S.X.H.G.
0.6781.6At3g04740819634SWP (STRUWWELPETER)encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.S.X.H.G.
0.5974.7At1g09730837501Ulp1 protease family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.4761.2At5g51340835208unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBS.X.H.G.
0.4355.3At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
10.999.2GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.999.2GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
10.699.2GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.799.1GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
9.499.1GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.399.1GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.299.1GSM142642MC002_ATH1_A7.2-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.199.1GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
9.199.1GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-140At3g60920825263beige/BEACH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBC.G.S.X.
0.015e-138At1g76380843970DNA-binding bromodomain-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;MFOPBVC.G.S.X.
0.015e-138At1g77570844092DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system, nucleus;PMOFC.G.S.X.
0.012e+036At5g64813836603LIP1 (Light Insensitive Period1)The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.C.G.S.X.
0.012e+036At5g50340835101ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide bindingF:damaged DNA binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:DNA repair;C:cellular_component unknown;BOAPMVC.G.S.X.
0.012e+036At3g22120821775CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)cell wall-plasma membrane linker protein homolog (CWLP)C.G.S.X.
0.012e+036At3g55020824668RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:cytosol;MOFBPVAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.181e-63246Glycine maxGma.1115.2.A1_atCD416068--2e-64At5g64270splicing factor, putativeC.G.S.X.
0.395e-104379Hordeum vulgareContig12455_atContig12455--7e-104At5g64270splicing factor, putativeC.G.S.X.
0.384e-74282Oryza sativaOs02g0142300AK067944.1-Splicing factor 3B subunit 1 (Spliceosomeassociated protein 155) (SAP 155) (SF3b155) (Pre-mRNAsplicing factor SF3b 155 kDa subunit) (146 kDa nuclearprotein)2e-74At5g64270splicing factor, putativeC.G.S.X.
0.172e-29133Populus trichocarpaPtpAffx.201126.1.S1_atpmrna2215--3e-30At5g64270splicing factor, putativeC.G.S.X.
0.392e-52208Triticum aestivumTa.3352.1.S1_atCK206169--2e-52At5g64270splicing factor, putativeC.G.S.X.
0.012e+034Vitis vinifera1616619_atCF404669hypothetical protein LOC100263192-1e+0At5g39600unknown proteinC.G.S.X.
0.244e-58226Zea maysZm.3656.2.S1_atCF050698hypothetical protein LOC100273489-4e-58At5g64270splicing factor, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006397Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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