CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64230

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.99 98.1 At5g64230 836544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.48 62.5 At1g22985 838906 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. S.X. H.G.
0.34 39.8 At3g23920 821975 BAM1 (BETA-AMYLASE 1) Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3. S.X. H.G.
0.33 38.1 At1g23550 838965 SRO2 (SIMILAR TO RCD ONE 2) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. S.X. H.G.
0.28 30.3 At1g75860 843919 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB S.X. H.G.
0.27 26.2 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO S.X. H.G.
0.27 26.2 At1g27760 839669 interferon-related developmental regulator family protein / IFRD protein family Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. S.X. H.G.
0.27 26.2 At3g05500 819715 rubber elongation factor (REF) family protein F:unknown;P:biological_process unknown;C:vacuole;P S.X. H.G.
0.25 22.6 At4g03320 827972 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) F:unknown;P:unknown;C:unknown;PB S.X. H.G.
0.24 20.7 At5g27520 832812 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
525.5 100.0 E-MEXP-1443-raw-cel-1581869803
513.4 100.0 E-MEXP-449-raw-cel-676423362
387.9 100.0 E-MEXP-1443-raw-cel-1581869745
161.5 99.9 E-MEXP-449-raw-cel-676423306
135.8 99.9 E-MEXP-1443-raw-cel-1581869921
98.5 99.9 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
75.9 99.9 GSM128676 Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
56.2 99.8 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
55.8 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
53.6 99.8 GSM205160 protoplast_controlDNA_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 9e-3 42 At3g23930 821976 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 9e-3 42 At1g10850 3766694 ATP binding / protein binding / protein kinase/ protein serine/threonine kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 4e-2 40 At5g48360 834889 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBA C.G. S.X.
0.01 4e-2 40 At5g41620 834164 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;OMBFPA C.G. S.X.
0.01 4e-2 40 At4g20720 827820 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV C.G. S.X.
0.03 4e-2 40 At4g09530 826537 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO C.G. S.X.
0.02 4e-2 40 At4g03160 828054 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.03 4e-2 40 At2g25190 817057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOF C.G. S.X.
0.01 4e-2 40 At1g05090 839327 dentin sialophosphoprotein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.64720.1.S1_at BU964510 - - 2e-20 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig4512_s_at Contig4512 - - 2e-2 At2g22080 unknown protein C.G. S.X.
0.03 7e-2 40 Oryza sativa OsAffx.19152.1.S1_at - - - 0 C.G. S.X.
0.04 8e-1 36 Populus trichocarpa PtpAffx.50689.1.A1_at CV236424 hypothetical protein - 5e-1 At4g16140 proline-rich family protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.52006.1.S1_at CA714803 - - 3e+0 At1g01305 unknown protein C.G. S.X.
0.04 2e-4 46 Vitis vinifera 1621746_at CD003963 hypothetical protein LOC100261012 - 4e-4 At5g64230 unknown protein C.G. S.X.
0.02 6e-2 38 Zea mays ZmAffx.1210.1.A1_at BG841129 - - 7e-2 At5g64230 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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