CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64160

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At5g64160 836537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO S.X. H.G.
0.75 86.9 At2g24830 817020 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFPOB S.X. H.G.
0.35 41.6 At1g07470 837259 transcription factor IIA large subunit, putative / TFIIA large subunit, putative F:RNA polymerase II transcription factor activity, transcription factor activity;P:transcription initiation from RNA polymerase II promoter, transcription;C:transcription factor TFIIA complex;MFPOBV S.X. H.G.
0.33 38.1 At3g52220 824387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA S.X. H.G.
0.22 17.5 At3g62140 825387 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.9 99.8 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.9 99.6 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
24.2 99.6 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
20.3 99.6 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.7 99.6 GSM311289 Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
19.4 99.6 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
18.9 99.5 GSM226531 L1SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
17.6 99.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.7 99.5 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
14.5 99.4 GSM226532 L2SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-3 42 At1g12860 837843 SCRM2 (SCREAM 2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation. C.G. S.X.
0.01 2e-2 40 At5g39980 833995 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.01 2e-2 40 At5g20170 832140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPF C.G. S.X.
0.02 2e-2 40 At4g30250 829148 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.03 2e-2 40 At4g36060 829762 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast, cytoplasm;PMOBF C.G. S.X.
0.03 2e-2 40 At2g20120 816531 COV1 (CONTINUOUS VASCULAR RING) Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles. C.G. S.X.
0.02 9e-2 38 At5g55490 835642 GEX1 (GAMETE EXPRESSED PROTEIN 1) Encodes a transmembrane domain containing protein that is expressed in pollen germ cells. C.G. S.X.
0.01 9e-2 38 At5g38640 833854 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPV C.G. S.X.
0.01 9e-2 38 At4g22200 828311 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-2 40 Glycine max GmaAffx.89905.1.S1_at CF805630 - - 2e-2 At5g64160 unknown protein C.G. S.X.
0.05 2e-1 36 Hordeum vulgare HF21N04r_at HF21N04r - - 2e+0 At4g19150 ankyrin repeat family protein C.G. S.X.
0.09 7e-10 65 Oryza sativa Os02g0753200 AK067176.1 - Conserved hypothetical protein 6e-10 At5g64160 unknown protein C.G. S.X.
0.13 2e-6 54 Populus trichocarpa Ptp.3037.1.A1_at CV257978 hypothetical protein - 2e-6 At5g64160 unknown protein C.G. S.X.
0.04 9e-2 38 Triticum aestivum Ta.20175.2.S1_at CA677975 - - 1e+0 At5g55430 unknown protein C.G. S.X.
0.13 3e-2 38 Vitis vinifera 1614494_at CB970251 hypothetical protein LOC100251961 - 6e-2 At5g64160 unknown protein C.G. S.X.
0.07 1e-1 36 Zea mays Zm.6915.1.S1_at AW256266 hypothetical protein LOC100280116 - 5e-1 At5g64160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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