CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64120

Gene name peroxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g64120 836533 peroxidase, putative encodes a cell wall bound peroxidase that is induced by hypo-osmolarity S.X. H.G.
0.77 88.0 At2g17740 816283 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PO S.X. H.G.
0.73 85.5 At2g43620 818964 chitinase, putative F:chitin binding, chitinase activity;P:response to salt stress;C:apoplast;PBFOVM S.X. H.G.
0.67 81.6 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA S.X. H.G.
0.63 78.1 At4g22470 828342 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;MBOPFVA S.X. H.G.
0.57 73.8 At2g19190 816436 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1) Receptor-like protein kinase. Involved in early defense signaling. S.X. H.G.
0.50 65.3 At3g46280 823773 protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
70.1 99.9 E-MEXP-1094-raw-cel-1379507313
63.9 99.8 GSM226542 L12SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
59.3 99.8 E-MEXP-1094-raw-cel-1379507273
51.9 99.8 E-NASC-76-raw-cel-1359878900
51.6 99.8 E-MEXP-807-raw-cel-1173272832
51.0 99.8 GSM128686 Underwood_1-39_E.coli-TUV86-2-fliC-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
46.8 99.8 GSM131111 AtGen_B-39_3-4-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
46.8 99.8 E-MEXP-1094-raw-cel-1379507553
45.5 99.8 GSM142835 MG001_ATH1_A13-Torres-4N1 GSE6176 Impact of Type III effectors on plant defense responses
43.7 99.8 GSM131113 AtGen_B-41_3-6-4_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 1e-69 264 At5g39580 833954 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO C.G. S.X.
0.04 3e-8 59 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. C.G. S.X.
0.03 3e-5 50 At5g19880 832110 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to ethylene stimulus, response to oxidative stress, response to virus, N-terminal protein myristoylation;C:endomembrane system;PFOM C.G. S.X.
0.06 5e-4 46 At2g41480 818746 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:unknown;POFBM C.G. S.X.
0.05 2e-3 44 At5g64110 836532 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:membrane;PFOB C.G. S.X.
0.03 2e-3 44 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB C.G. S.X.
0.05 8e-3 42 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB C.G. S.X.
0.03 8e-3 42 At5g42180 834223 peroxidase 64 (PER64) (P64) (PRXR4) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-1 36 Glycine max GmaAffx.92917.1.S1_s_at CF808642 peroxidase - 6e-3 At3g21770 peroxidase 30 (PER30) (P30) (PRXR9) C.G. S.X.
0.03 6e-5 48 Hordeum vulgare Contig2113_at Contig2113 - - 4e-2 At1g44970 peroxidase, putative C.G. S.X.
0.04 6e-2 40 Oryza sativa Os05g0135400 AK063587.1 - Plant peroxidase family protein 4e-1 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.05 3e-3 44 Populus trichocarpa Ptp.7220.1.S1_s_at DN502495 hypothetical protein - 2e-3 At1g05260 RCI3 (RARE COLD INDUCIBLE GENE 3) C.G. S.X.
0.04 1e-4 48 Triticum aestivum TaAffx.108531.2.S1_at CA682554 - - 2e-4 At3g49960 peroxidase, putative C.G. S.X.
0.05 2e-3 42 Vitis vinifera 1610628_at CF213924 hypothetical protein LOC100267732 - 2e-5 At5g42180 peroxidase 64 (PER64) (P64) (PRXR4) C.G. S.X.
0.04 9e-7 54 Zea mays Zm.404.1.S1_at AF037033.1 anionic peroxidase H - 8e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045730 A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.
X GO:0050832 Reactions triggered in response to the presence of a fungus that act to protect the cell or organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00360 Phenylalanine metabolism
00680 Methane metabolism
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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