CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g64040

Gene name PSAN

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g64040 836525 PSAN Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex. S.X. H.G.
0.92 96.0 At4g05180 825866 PSBQ-2 Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. S.X. H.G.
0.91 95.6 At4g28750 828996 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I S.X. H.G.
0.91 95.6 At5g66570 836789 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO1 is the major isoform in the wild-type. S.X. H.G.
0.91 95.6 At1g30380 839918 PSAK (photosystem I subunit K) Encodes subunit K of photosystem I reaction center. S.X. H.G.
0.90 95.1 At1g52230 841653 PSAH2 (PHOTOSYSTEM I SUBUNIT H2) F:molecular_function unknown;P:photosynthesis;C:in 6 components;PO S.X. H.G.
0.90 95.1 At1g08380 837358 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. S.X. H.G.
0.90 95.1 At4g12800 826892 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. S.X. H.G.
0.89 94.6 At1g55670 842016 PSAG (PHOTOSYSTEM I SUBUNIT G) Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin. S.X. H.G.
0.89 94.6 At4g02770 828183 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 98.6 GSM173445 oxt6 mutant, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
5.9 98.5 E-ATMX-35-raw-cel-1574334896
5.8 98.4 GSM173446 oxt6 mutant, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
5.5 98.3 GSM94014 S5 second repeat GSE4113 Arabidopsis plants with altered levels of alternative oxidase
4.8 98.0 E-MEXP-1454-raw-cel-1585858291
4.7 98.0 GSM151700 Col-0 48 hpi, biological replicate 1 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
4.6 97.9 E-MEXP-1454-raw-cel-1585857887
4.3 97.7 GSM151694 Col-0 uninoculated, biological replicate 1 GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
4.3 97.7 E-ATMX-35-raw-cel-1574334912
4.2 97.6 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-4 46 At1g49400 841363 emb1129 (embryo defective 1129) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, ribosome, intracellular;BOAPFM C.G. S.X.
0.01 6e-2 38 At5g08450 830744 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 3e-1 36 At5g62700 836391 TUB3 encodes tubulin beta-2/beta-3 chain C.G. S.X.
0.05 3e-1 36 At3g44590 823584 60S acidic ribosomal protein P2 (RPP2D) F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 9e-39 161 Glycine max Gma.4613.5.A1_x_at CD412100 - - 1e-38 At5g64040 PSAN C.G. S.X.
0.17 8e-6 50 Hordeum vulgare Contig3221_at Contig3221 - - 2e-5 At5g64040 PSAN C.G. S.X.
0.29 9e-15 81 Oryza sativa Os12g0189400 AK059037.1 - Photosystem I reaction centre subunit N,chloroplast precursor (PSI- N) 8e-15 At5g64040 PSAN C.G. S.X.
0.38 2e-73 276 Populus trichocarpa Ptp.4200.1.S1_s_at CV278991 hypothetical protein - 3e-73 At5g64040 PSAN C.G. S.X.
0.17 2e-5 50 Triticum aestivum Ta.28363.3.S1_x_at BJ247288 - - 2e-5 At5g64040 PSAN C.G. S.X.
0.32 4e-53 206 Vitis vinifera 1622534_at BQ799942 hypothetical protein LOC100264322 - 1e-35 At5g64040 PSAN C.G. S.X.
0.07 5e-4 44 Zea mays Zm.959.1.A1_at AY103702.1 photosystem I N subunit1 - 1e-4 At5g64040 PSAN C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0009773 Electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00195 Photosynthesis
01100 Metabolic pathways
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