Gene omics information

Query gene ID At5g63980
Gene name SAL1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3846.7At5g63980836519SAL1Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast. It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.S.X.H.G.
0.4050.8At4g13430826975IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)F:4 iron, 4 sulfur cluster binding, lyase activity, hydro-lyase activity;P:response to cadmium ion, metabolic process;C:chloroplast stroma, chloroplast;OBFMAPS.X.H.G.
0.4050.8At5g04590830336SIRA.thaliana gene encoding sulfite reductase.S.X.H.G.
0.4050.8At5g44720834501molybdenum cofactor sulfurase family proteinF:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:cellular_component unknown;BMFOPAS.X.H.G.
0.1811.4At3g08640820011alphavirus core protein familyF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;MBPOFVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
35.599.7GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
30.399.7GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
23.599.6GSM183515ATR1_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
21.499.6GSM183514MYB29_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
20.099.6GSM183511MYB76_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
19.399.6GSM183512MYB76_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
14.199.4E-MEXP-711-raw-cel-1563002768
11.899.3GSM183513MYB29_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
11.099.2E-MEXP-711-raw-cel-1563002803
10.999.2GSM299332pkl Mutant Germinating Seeds With Solvent Treatment Only Set 6 of 6GSE11852Effect of uniconazole on wt and pkl mutant germinating seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.171e-23111At5g092908307883'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPAC.G.S.X.
0.113e-963At5g639908365203'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putativeF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:cellular_component unknown;BOFPMAC.G.S.X.
0.022e-344At4g05090825853inositol monophosphatase family proteinF:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMAC.G.S.X.
0.064e-240At5g64000836521SAL23'(2'),5'-bisphosphate nucleotidaseC.G.S.X.
0.026e-136At5g49610835023F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOC.G.S.X.
0.026e-136At4g01650828138-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPC.G.S.X.
0.026e-136At4g36850829838-F:unknown;P:biological_process unknown;C:membrane;FMOPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.224e-963Glycine maxGma.1478.2.S1_s_atBI785792--1e-9At5g63980SAL1C.G.S.X.
0.112e-550Hordeum vulgareContig4542_atContig4542--5e-5At5g63980SAL1C.G.S.X.
0.118e-550Oryza sativaOs12g0183300U33283.1-3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase)5e-5At5g63980SAL1C.G.S.X.
0.345e-30133Populus trichocarpaPtpAffx.6474.1.S1_atCV245203hypothetical protein-4e-30At5g63980SAL1C.G.S.X.
0.113e-654Triticum aestivumTa.3052.1.S1_atCK208930--4e-6At5g63980SAL1C.G.S.X.
0.027e-134Vitis vinifera1608559_atCD800581hypothetical protein LOC100245144-2e-8At4g30990bindingC.G.S.X.
0.104e-342Zea maysZm.2521.1.A1_atCO519789hypothetical protein LOC100276170-1e-2At5g63980SAL1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
XGO:0051512Any process that activates or increases the frequency, rate or extent of unidimensional cell growth, the process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis.
XGO:0009414A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
XGO:0010587The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression.
XGO:0006401The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
XGO:0006790The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
XGO:0009628A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
XGO:0009738A series of molecular signals mediated by the detection of abscisic acid.
XGO:0009968Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction.
XGO:0016481Any process that stops, prevents or reduces the frequency, rate or extent of transcription.
XGO:0043157A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment.
SGO:0048015A series of molecular signals in which a cell uses a phosphoinositide to convert an extracellular signal into a response.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00562Link to KEGG PATHWAYInositol phosphate metabolism
00920Link to KEGG PATHWAYSulfur metabolism
01100Link to KEGG PATHWAYMetabolic pathways
04070Link to KEGG PATHWAYPhosphatidylinositol signaling system
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