CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g63910

Gene name FCLY (FARNESYLCYSTEINE LYASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. S.X. H.G.
0.60 75.7 At4g26240 828730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF S.X. H.G.
0.56 73.0 At2g23780 816910 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV S.X. H.G.
0.53 68.6 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO S.X. H.G.
0.53 68.6 At5g53530 835435 VPS26A (VACUOLAR PROTEIN SORTING 26A) Homolog of yeast retromer subunit VPS26. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. S.X. H.G.
0.52 67.4 At5g21090 832233 leucine-rich repeat protein, putative F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA S.X. H.G.
0.52 67.4 At3g55830 824749 EPC1 (ECTOPICALLY PARTING CELLS) A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant. S.X. H.G.
0.50 65.3 At4g22750 828372 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:endomembrane system;MOFP S.X. H.G.
0.49 63.5 At5g22360 832297 ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. S.X. H.G.
0.49 63.5 At5g02040 831904 PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;MPF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.9 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.0 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.5 99.5 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
15.3 99.4 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.9 99.4 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.7 99.4 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
13.6 99.4 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
13.0 99.4 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.3 99.3 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.2 99.3 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g22104 821773 phototropic-responsive NPH3 protein-related F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMOBF C.G. S.X.
0.01 7e-1 36 At4g23860 828485 PHD finger protein-related F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cytoplasm;MFOP C.G. S.X.
0.01 7e-1 36 At3g30300 822730 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 7e-1 36 At3g53940 824561 mitochondrial substrate carrier family protein F:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOV C.G. S.X.
0.01 3e+0 34 At5g57770 835885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 3e+0 34 At4g00830 827998 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-9 65 Glycine max Gma.4668.1.S1_at AW348596 - - 5e-10 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig18503_at Contig18503 - - 1e-1 At4g01995 unknown protein C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.7034.1.S1_at - - - 0 C.G. S.X.
0.08 4e-6 54 Populus trichocarpa PtpAffx.13452.1.S1_at CV235856 hypothetical protein - 2e-6 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.25411.1.S1_at CA700489 - - 4e+0 At4g35320 unknown protein C.G. S.X.
0.05 3e-10 65 Vitis vinifera 1609952_at CB980120 hypothetical protein LOC100268071 - 3e-10 At5g63910 FCLY (FARNESYLCYSTEINE LYASE) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6330.1.A1_at AI691417 - - 8e-1 At1g48170 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045338 The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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