CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g63840

Gene name RSW3 (RADIAL SWELLING 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At5g63840 836504 RSW3 (RADIAL SWELLING 3) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. S.X. H.G.
0.73 85.5 At1g78920 844231 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) vacuolar-type H+-translocating inorganic pyrophosphatase S.X. H.G.
0.67 81.6 At3g51050 824269 FG-GAP repeat-containing protein F:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPM S.X. H.G.
0.67 81.6 At4g11380 826741 beta-adaptin, putative F:protein transporter activity, protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MOFPBA S.X. H.G.
0.57 73.8 At5g65950 836725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.52 67.4 At2g21390 816678 coatomer protein complex, subunit alpha, putative F:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPA S.X. H.G.
0.50 65.3 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.6 99.3 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.2 99.2 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
9.0 99.1 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.3 99.0 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
7.6 98.9 GSM133978 Birnbaum_1-8_StageII-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
7.4 98.8 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.0 98.7 GSM133980 Birnbaum_1-10_StageII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
7.0 98.7 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.8 98.7 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
6.6 98.7 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 38 At4g01840 828091 KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. C.G. S.X.
0.01 3e-1 38 At1g61460 842440 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA C.G. S.X.
0.01 1e+0 36 At4g22030 828292 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 1e+0 36 At4g32020 829333 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFM C.G. S.X.
0.01 1e+0 36 At4g28310 828946 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.01 1e+0 36 At3g09050 820058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF C.G. S.X.
0.01 1e+0 36 At2g25660 817107 emb2410 (embryo defective 2410) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BOP C.G. S.X.
0.01 1e+0 36 At1g72600 843592 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFOBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-13 77 Glycine max Gma.6669.1.S1_at AI960146 - - 2e-13 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.14 2e-10 67 Hordeum vulgare Contig9432_at Contig9432 - - 3e-10 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.19 9e-25 117 Oryza sativa Os03g0216600 AK066051.1 - Neutral alpha-glucosidase AB precursor (EC3.2.1.84) (Glucosidase II alpha subunit) (Alphaglucosidase 2). Splice isoform 3 5e-25 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.09 6e-10 67 Populus trichocarpa PtpAffx.48310.2.S1_s_at CA821442 hypothetical protein - 9e-11 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.07 1e-7 59 Triticum aestivum Ta.1604.1.S1_at CK155787 - - 6e-8 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.04 3e-5 50 Vitis vinifera 1613731_at CF513972 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
0.16 3e-15 83 Zea mays Zm.13759.1.S1_a_at CD441609 hypothetical protein LOC100279293 - 6e-15 At5g63840 RSW3 (RADIAL SWELLING 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
X GO:0030244 The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00438 Xyloglucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00052 Galactose metabolism
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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