Gene omics information

Query gene ID At5g63740
Gene name zinc finger protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g63740836494zinc finger protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.9998.1At4g18870827621heat shock transcription factor family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOS.X.H.G.
0.9897.8At3g48950824056glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAS.X.H.G.
0.9797.6At4g11510826756RALFL28 (ralf-like 28)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.9697.3At2g26870817228phosphoesterase family proteinF:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOAS.X.H.G.
0.9697.3At3g01880821296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBOS.X.H.G.
0.9496.7At4g15040827163identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAMS.X.H.G.
0.9496.7At5g0949083080840S ribosomal protein S15 (RPS15B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAFS.X.H.G.
0.9396.4At2g23990816933plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMAS.X.H.G.
0.9396.4At4g39000830055AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1420.1100.0GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
1062.8100.0GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
828.6100.0GSM311280Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
677.3100.0GSM284393Arabidopsis GCE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
438.3100.0GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
62.899.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
45.099.8GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.599.7GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.133e-1479At5g63730836493IBR domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;MOPFC.G.S.X.
0.134e-1375At5g63760836496IBR domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;MOPFC.G.S.X.
0.046e-652At5g63750836495IBR domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;MPOFC.G.S.X.
0.048e-238At3g52550824421-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVBC.G.S.X.
0.013e-136At1g64070842711RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1)Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.C.G.S.X.
0.011e+034At5g23630832428ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy proteinA novel member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.C.G.S.X.
0.011e+034At5g20490832171XIKEncodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.C.G.S.X.
0.011e+034At5g13010831141EMB3011 (embryo defective 3011)F:RNA helicase activity, helicase activity, nucleic acid binding, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MBOFVPAC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Glycine maxGmaAffx.16049.1.S1_atBI321970--6e-2At5g63740zinc finger protein-relatedC.G.S.X.
0.026e-134Hordeum vulgareContig19912_atContig19912--2e+0At5g63740zinc finger protein-relatedC.G.S.X.
0.031e+132Oryza sativaOs08g05042009636.m03980--3e+0At5g11750ribosomal protein L19 family proteinC.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.210566.1.S1_atpmrna20728--3e-4Atcg00160-C.G.S.X.
0.033e-136Triticum aestivumTaAffx.53827.1.S1_atCA688722--1e+0At3g33494unknown proteinC.G.S.X.
0.036e+030Vitis vinifera1620829_atCB979584--2e-1At5g33390glycine-rich proteinC.G.S.X.
0.029e+030Zea maysZm.17983.1.A1_atBG840853hypothetical protein LOC100276768-1e+0At2g40910F-box protein-relatedC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage