CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g63740

Gene name zinc finger protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g63740 836494 zinc finger protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPVA S.X. H.G.
0.99 98.1 At4g18870 827621 heat shock transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO S.X. H.G.
0.98 97.8 At3g48950 824056 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.97 97.6 At4g11510 826756 RALFL28 (ralf-like 28) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.96 97.3 At2g26870 817228 phosphoesterase family protein F:hydrolase activity, acting on ester bonds;P:triglyceride biosynthetic process, phospholipid biosynthetic process;C:endomembrane system;BFPOA S.X. H.G.
0.96 97.3 At3g01880 821296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFMBO S.X. H.G.
0.94 96.7 At4g15040 827163 identical protein binding / serine-type endopeptidase F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation, negative regulation of catalytic activity;C:unknown;BPOFAM S.X. H.G.
0.94 96.7 At5g09490 830808 40S ribosomal protein S15 (RPS15B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;BOPMAF S.X. H.G.
0.93 96.4 At2g23990 816933 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVFMA S.X. H.G.
0.93 96.4 At4g39000 830055 AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1420.1 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
1062.8 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
828.6 100.0 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
677.3 100.0 GSM284393 Arabidopsis GCE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
438.3 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
62.8 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
45.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.4 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.2 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.5 99.7 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.13 3e-14 79 At5g63730 836493 IBR domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;MOPF C.G. S.X.
0.13 4e-13 75 At5g63760 836496 IBR domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;MOPF C.G. S.X.
0.04 6e-6 52 At5g63750 836495 IBR domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;MPOF C.G. S.X.
0.04 8e-2 38 At3g52550 824421 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPVB C.G. S.X.
0.01 3e-1 36 At1g64070 842711 RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1) Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. C.G. S.X.
0.01 1e+0 34 At5g23630 832428 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase familiy protein A novel member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure. C.G. S.X.
0.01 1e+0 34 At5g20490 832171 XIK Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. C.G. S.X.
0.01 1e+0 34 At5g13010 831141 EMB3011 (embryo defective 3011) F:RNA helicase activity, helicase activity, nucleic acid binding, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MBOFVPA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max GmaAffx.16049.1.S1_at BI321970 - - 6e-2 At5g63740 zinc finger protein-related C.G. S.X.
0.02 6e-1 34 Hordeum vulgare Contig19912_at Contig19912 - - 2e+0 At5g63740 zinc finger protein-related C.G. S.X.
0.03 1e+1 32 Oryza sativa Os08g0504200 9636.m03980 - - 3e+0 At5g11750 ribosomal protein L19 family protein C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.210566.1.S1_at pmrna20728 - - 3e-4 Atcg00160 - C.G. S.X.
0.03 3e-1 36 Triticum aestivum TaAffx.53827.1.S1_at CA688722 - - 1e+0 At3g33494 unknown protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620829_at CB979584 - - 2e-1 At5g33390 glycine-rich protein C.G. S.X.
0.02 9e+0 30 Zea mays Zm.17983.1.A1_at BG840853 hypothetical protein LOC100276768 - 1e+0 At2g40910 F-box protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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