CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g63680

Gene name pyruvate kinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g63680 836488 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:response to cadmium ion, glycolysis;C:plasma membrane;BOMPFA S.X. H.G.
0.45 58.3 At3g52200 824385 LTA3 dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear S.X. H.G.
0.37 45.0 At1g51980 841627 mitochondrial processing peptidase alpha subunit, putative F:metalloendopeptidase activity, ATP binding;P:proteolysis, response to salt stress;C:in 6 components;BOMFPAV S.X. H.G.
0.36 43.6 At3g49390 824101 CID10 RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins. S.X. H.G.
0.35 41.6 At3g17240 820984 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) lipoamide dehydrogenase precursor S.X. H.G.
0.34 39.8 At1g53310 841765 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. S.X. H.G.
0.32 35.7 At2g16950 816198 TRN1 (TRANSPORTIN 1) Nuclear import receptor for AtGRP7. S.X. H.G.
0.31 33.8 At3g55410 824707 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, oxoglutarate dehydrogenase (succinyl-transferring) activity, thiamin pyrophosphate binding;P:glycolysis, metabolic process;C:mitochondrion;OBMFPA S.X. H.G.
0.30 32.1 At2g20760 816605 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane;MBOPF S.X. H.G.
0.30 32.1 At2g17980 816310 ATSLY1 member of SLY1 Gene Family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
28.9 99.7 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
25.8 99.7 E-ATMX-31-raw-cel-1516947899
25.7 99.7 GSM39200 Col_C2 GSE2169 rre1 and rre2 mutants
25.1 99.6 E-ATMX-31-raw-cel-1516947916
24.7 99.6 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
21.9 99.6 E-MEXP-791-raw-cel-1122937605
21.7 99.6 E-ATMX-31-raw-cel-1516947882
21.5 99.6 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.1 99.6 E-MEXP-791-raw-cel-1122937587
17.3 99.5 E-MEXP-1797-raw-cel-1669768012
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 1247 At5g08570 830758 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
0.35 7e-35 149 At5g56350 835735 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
0.29 4e-30 133 At4g26390 828745 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
0.21 1e-14 81 At3g04050 819560 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFA C.G. S.X.
0.23 3e-9 63 At3g55650 824731 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:mitochondrion;BOMPFA C.G. S.X.
0.18 3e-9 63 At3g55810 824747 pyruvate kinase, putative F:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA C.G. S.X.
0.23 1e-8 61 At3g25960 822193 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA C.G. S.X.
0.02 2e-1 38 At4g14410 827086 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMBFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 5e-95 349 Glycine max Gma.4073.1.S1_at L08632.1 pyruvate kinase - 5e-95 At5g63680 pyruvate kinase, putative C.G. S.X.
0.19 5e-25 115 Hordeum vulgare Contig6989_at Contig6989 - - 7e-14 At4g26390 pyruvate kinase, putative C.G. S.X.
0.35 3e-54 214 Oryza sativa Os04g0677500 D21297.1 - Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK) 1e-4 At3g04050 pyruvate kinase, putative C.G. S.X.
0.57 6e-58 226 Populus trichocarpa Ptp.5845.1.S1_s_at CV130955 hypothetical protein - 4e-58 At5g63680 pyruvate kinase, putative C.G. S.X.
0.17 1e-24 115 Triticum aestivum Ta.21113.2.S1_a_at CK207050 - - 1e-40 At4g26390 pyruvate kinase, putative C.G. S.X.
0.33 2e-72 272 Vitis vinifera 1618753_at BQ796362 hypothetical protein LOC100267318 - 1e-89 At5g08570 pyruvate kinase, putative C.G. S.X.
0.26 5e-34 145 Zea mays Zm.15070.1.A1_at BG841343 pyruvate kinase, cytosolic isozyme - 9e-34 At5g63680 pyruvate kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00010 Glycolysis / Gluconeogenesis
00230 Purine metabolism
00620 Pyruvate metabolism
00710 Carbon fixation in photosynthetic organisms
01061 Biosynthesis of phenylpropanoids
01062 Biosynthesis of terpenoids and steroids
01063 Biosynthesis of alkaloids derived from shikimate pathway
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065 Biosynthesis of alkaloids derived from histidine and purine
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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