CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g63620

Gene name oxidoreductase, zinc-binding dehydrogenase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.91 95.6 At5g63620 836482 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV S.X. H.G.
0.56 73.0 At4g21810 828269 DER2.1 (DERLIN-2.1) F:molecular_function unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.48 62.5 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV S.X. H.G.
0.46 59.8 At2g15570 816050 thioredoxin M-type 3, chloroplast (TRX-M3) chloroplast protein similar to prokaryotic thioredoxin. S.X. H.G.
0.46 59.8 At4g33940 829539 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;MOPF S.X. H.G.
0.46 59.8 At3g06380 819812 ATTLP9 (TUBBY-LIKE PROTEIN 9) Member of TLP family S.X. H.G.
0.45 58.3 At3g55770 824743 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF S.X. H.G.
0.44 57.2 At1g76920 844027 F-box family protein (FBX3) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;P S.X. H.G.
0.43 55.3 At2g43430 818944 GLX2-1 (GLYOXALASE 2-1) glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear S.X. H.G.
0.43 55.3 At5g59960 836118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;PO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.2 99.6 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
11.5 99.3 GSM131329 AtGen_6-3621_Saltstress-Roots-24.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
11.0 99.2 GSM253160 6h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
10.8 99.2 GSM292076 Wt, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
10.6 99.2 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
10.5 99.2 GSM292081 pif1-2, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
10.2 99.2 GSM131330 AtGen_6-3622_Saltstress-Roots-24.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
9.9 99.1 GSM253161 8h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
9.6 99.1 GSM131302 AtGen_6-2522_Osmoticstress-Roots-12.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
9.6 99.1 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At3g16910 820946 AAE7 (ACYL-ACTIVATING ENZYME 7) Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. C.G. S.X.
0.02 2e-1 38 At2g21730 816710 CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.02 2e-1 38 At2g21890 816725 CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) F:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV C.G. S.X.
0.02 2e-1 38 At2g02540 814784 ATHB21 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 21) Zinc finger homeobox protein. Expressed in vascular tissue. In a yeast one hybrid system was not able to transactivate a reporter gene. C.G. S.X.
0.02 6e-1 36 At2g40830 818680 RHC1A Encodes a putative RING-H2 finger protein RHC1a. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 2e-41 171 Glycine max GmaAffx.87563.1.S1_at BG881336 - - 1e-41 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.19 3e-26 119 Hordeum vulgare Contig4476_at Contig4476 - - 7e-26 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.13 9e-11 69 Oryza sativa Os08g0109200 AK101912.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 6e-11 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.29 1e-30 135 Populus trichocarpa PtpAffx.3718.1.A1_at CX167706 hypothetical protein - 6e-31 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.07 5e-14 79 Triticum aestivum Ta.22645.1.S1_a_at CA665091 - - 6e-14 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.05 2e-1 36 Vitis vinifera 1614664_at CB002179 - - 1e-1 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.04 1e-3 44 Zea mays Zm.14094.1.S1_at CO519882 S-glutathione dehydrogenase/class III alcohol dehydrogenase - 3e-3 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0055114 The process of removal or addition of one or more electrons with or without the concomitant removal or addition of a proton or protons.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00120 Phosphoenolpyruvate and Pyruvate metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage