Gene omics information

Query gene ID At5g63420
Gene name emb2746 (embryo defective 2746)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g63420836461emb2746 (embryo defective 2746)F:hydrolase activity, DNA binding, catalytic activity;P:embryonic development ending in seed dormancy, metabolic process;C:chloroplast;OBMAPFVS.X.H.G.
0.7083.5At1g79560844294FTSH12 (FTSH PROTEASE 12)encodes an FtsH protease that is localized to the chloroplastS.X.H.G.
0.6478.9At3g48500824009RNA bindingF:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFBS.X.H.G.
0.6478.9At1g63680842672MUREEncodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis. Localized to plastids. AtMurE is involved in chloroplast biogenesis.S.X.H.G.
0.6075.7At2g34640818029PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.S.X.H.G.
0.5974.7At1g69200843251kinaseF:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMFS.X.H.G.
0.5873.8At3g04260819581PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3)F:DNA binding, nucleic acid binding;P:unknown;C:plastid chromosome, nucleus, chloroplast, nucleoid, membrane;MOPFBVAS.X.H.G.
0.5673.0At3g16290820876EMB2083 (embryo defective 2083)F:in 8 functions;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAVS.X.H.G.
0.5673.0At1g06950837205TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110)Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.S.X.H.G.
0.5469.5At5g64580836579AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, zinc ion binding, ATP binding;P:unknown;C:chloroplast, chloroplast envelope;BOMFPAVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
34.799.7GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
32.299.7GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
21.999.6GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
21.099.6GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
19.999.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
19.199.6GSM133306RIKEN-NAKABAYASHI2BGSE5700AtGenExpress: Effect of ABA during seed imbibition
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.019e-240At5g42030834208ABIL4 (ABL INTERACTOR-LIKE PROTEIN 4)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e-138At5g26150832684protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.013e-138At1g19025838484DNA cross-link repair protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFBOPAC.G.S.X.
0.011e+036At5g64940836618ATATH13Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.C.G.S.X.
0.011e+036At4g19900827735glycosyl transferase-relatedF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:mitochondrion, Golgi stack;POMFBAC.G.S.X.
0.011e+036At4g28210828936emb1923 (embryo defective 1923)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PC.G.S.X.
0.011e+036At1g09970837531LRR XI-23F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-31139Glycine maxGmaAffx.87620.1.S1_atBQ273464--2e-32At5g63420emb2746 (embryo defective 2746)C.G.S.X.
0.034e-550Hordeum vulgareContig13094_s_atContig13094--6e+0At5g52750heavy-metal-associated domain-containing proteinC.G.S.X.
0.101e-1173Oryza sativaOs02g0539600AK059666.1-Myb, DNA-binding domain containing protein3e-12At5g63420emb2746 (embryo defective 2746)C.G.S.X.
0.361e-93345Populus trichocarpaPtpAffx.212864.1.S1_atpmrna25170hypothetical protein-5e-94At5g63420emb2746 (embryo defective 2746)C.G.S.X.
0.056e-344Triticum aestivumTa.27220.1.S1_atBT009374.1--3e-3At5g63420emb2746 (embryo defective 2746)C.G.S.X.
0.024e-136Vitis vinifera1610639_atCF206618.1--8e-33At3g54660GR (GLUTATHIONE REDUCTASE)C.G.S.X.
0.202e-1067Zea maysZm.13112.1.A1_atAY110231.1--3e-10At5g63420emb2746 (embryo defective 2746)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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