CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62760

Gene name nuclear protein ZAP-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.68 82.2 At5g62760 836397 nuclear protein ZAP-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOVBA S.X. H.G.
0.47 61.2 At2g48050 - - - S.X. H.G.
0.35 41.6 At1g21580 838759 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.32 35.7 At3g08960 820048 binding / protein transporter F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFOP S.X. H.G.
0.31 33.8 At3g27325 822352 hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds;P:intracellular protein transport, GPI anchor metabolic process;C:endoplasmic reticulum, plasma membrane;FMPBO S.X. H.G.
0.31 33.8 At2g23740 816905 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:chromatin modification;C:nucleus, intracellular;MOPFB S.X. H.G.
0.30 32.1 At2g01130 814642 ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding F:in 6 functions;P:biological_process unknown;C:intracellular;BMOFPVA S.X. H.G.
0.30 32.1 At4g00790 - - - S.X. H.G.
0.22 17.5 At5g51690 835243 ACS12 Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. S.X. H.G.
0.21 15.8 At2g19280 816445 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
213.1 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
139.9 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.6 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
128.9 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
119.4 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
112.7 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
112.4 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
111.5 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-3 44 At5g10200 830884 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPOVB C.G. S.X.
0.02 4e-3 44 At3g06180 819792 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO C.G. S.X.
0.02 4e-3 44 At2g17970 816307 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.01 2e-2 42 At5g15540 831407 EMB2773 (EMBRYO DEFECTIVE 2773) Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis. C.G. S.X.
0.01 2e-2 42 At3g57430 824910 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POFMB C.G. S.X.
0.03 2e-2 42 At3g42310 823222 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VMPO C.G. S.X.
0.01 2e-2 42 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-30 133 Glycine max Gma.6971.1.S1_at CD398767 - - 4e-30 At5g62760 nuclear protein ZAP-related C.G. S.X.
0.07 1e-20 101 Hordeum vulgare Contig9583_at Contig9583 - - 1e-20 At5g62760 nuclear protein ZAP-related C.G. S.X.
0.10 2e-15 85 Oryza sativa Os02g0215000 AK072483.1 - Hypothetical protein 2e-15 At5g62760 nuclear protein ZAP-related C.G. S.X.
0.03 6e-3 44 Populus trichocarpa PtpAffx.212615.1.S1_at pmrna24699 hypothetical protein - 4e+0 At5g28630 glycine-rich protein C.G. S.X.
0.03 2e-2 42 Triticum aestivum TaAffx.78881.1.S1_at CA725309 - - 2e-1 At4g00270 DNA-binding storekeeper protein-related C.G. S.X.
0.03 3e-7 56 Vitis vinifera 1619739_at CB341962 hypothetical protein LOC100265726 - 1e-3 At2g39270 adenylate kinase family protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.11547.1.S1_at CA827895 hypothetical protein LOC100276375 - 1e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage