CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62750

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.88 94.0 At5g62750 836396 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.74 86.1 At1g24520 839067 BCP1 Male fertility gene acting on tapetum and microspore S.X. H.G.
0.71 84.2 At3g26860 822302 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.69 82.9 At5g47000 834746 peroxidase, putative F:xylan 1,4-beta-xylosidase activity, peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.68 82.2 At3g04700 819628 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g47280 841131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At2g24450 816981 FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVA S.X. H.G.
0.67 81.6 At5g15600 831412 SP1L4 (SPIRAL1-LIKE4) SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. S.X. H.G.
0.67 81.6 At4g02250 827589 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.65 79.6 At4g27580 828867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, cell wall;OBMFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
184.7 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
177.6 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
171.9 100.0 GSM154503 Arabidopsis desiccated mature pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
168.0 100.0 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
156.0 99.9 E-MEXP-1138-raw-cel-1432773226
148.2 99.9 E-MEXP-1138-raw-cel-1432772938
144.0 99.9 E-MEXP-1138-raw-cel-1432772874
143.5 99.9 E-MEXP-1138-raw-cel-1432772618
140.8 99.9 E-MEXP-1138-raw-cel-1432772650
140.2 99.9 E-MEXP-1138-raw-cel-1432772778
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 36 At5g43020 834317 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 2e-1 36 At5g49340 834994 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.01 7e-1 34 At5g39980 833995 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFBA C.G. S.X.
0.03 7e-1 34 At5g57770 835885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 7e-1 34 At4g20850 827833 TPP2 (TRIPEPTIDYL PEPTIDASE II) Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. C.G. S.X.
0.03 7e-1 34 At4g36590 829811 MADS-box protein (AGL40) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO C.G. S.X.
0.03 7e-1 34 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO C.G. S.X.
0.02 7e-1 34 At1g48620 841283 HON5 (High Mobility Group Family A 5) This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation. C.G. S.X.
0.05 3e+0 32 Atmg00450 - - hypothetical protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max Gma.13111.2.S1_at BG882577 - - 5e-5 At1g49410 TOM6 (translocase of the outer mitochondrial membrane 6) C.G. S.X.
0.04 1e+0 32 Hordeum vulgare EBem09_SQ004_I01_at EBem09_SQ004_I01 - - 6e-1 At3g32100 unknown protein C.G. S.X.
0.03 1e+0 34 Oryza sativa Os02g0305900 9636.m04294 - - 4e-1 At1g30880 unknown protein C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.63488.3.A1_at CV273768 - - 3e-17 At4g24240 WRKY7 C.G. S.X.
0.04 3e+0 32 Triticum aestivum Ta.9931.1.S1_at BJ234937 - - 4e+0 At5g62750 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1618101_at CF405874 hypothetical protein LOC100259048 - 9e-2 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.836.1.A1_at AI770581 - - 2e-1 At3g24350 SYP32 (SYNTAXIN OF PLANTS 32) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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