Gene omics information

Query gene ID At5g62640
Gene name proline-rich family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At5g62640836385proline-rich family proteinnuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLCS.X.H.G.
0.7385.5At1g79690844308atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)F:hydrolase activity;P:unknown;C:cytosol, vacuole;BOPFMAS.X.H.G.
0.7083.5At1g58250842193SAB (SABRE)SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.S.X.H.G.
0.5873.8At3g20550821601DDL (DAWDLE)Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.S.X.H.G.
0.5673.0At1g18490838430unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.5570.6At3g13445820546TBP1 (TATA BINDING PROTEIN 1)TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complexS.X.H.G.
0.5065.3At5g40190834017calmodulin-binding proteinIdentified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.S.X.H.G.
0.4457.2At3g06660819851PAPA-1-like family protein / zinc finger (HIT type) family proteinF:protein binding;P:unknown;C:chloroplast;OMFBPS.X.H.G.
0.3541.6At4g32970829434unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFS.X.H.G.
0.3133.8At4g10890826688unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
424.1100.0GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
159.299.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
55.499.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.099.7GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.599.7GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.399.6GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
16.699.5GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
15.399.4GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
14.599.4GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
14.199.4GSM133771Lindsey_1-23_torpedo-apical_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-240At5g11350831006endonuclease/exonuclease/phosphatase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPFOBVC.G.S.X.
0.015e-240At1g61080842400proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBOFPVAC.G.S.X.
0.022e-138At5g67450836881AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.C.G.S.X.
0.012e-138At5g36700833635PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)F:phosphoglycolate phosphatase activity;P:metabolic process;C:chloroplast stroma, chloroplast;BOMFAPC.G.S.X.
0.012e-138At5g36790833646phosphoglycolate phosphatase, putativeF:hydrolase activity, phosphatase activity, phosphoglycolate phosphatase activity, catalytic activity;P:metabolic process;C:apoplast, nucleus, chloroplast stroma, vacuole, cytoplasm;BOMFAPC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.143e-1377Glycine maxGma.4413.1.S1_atCD403009--9e-14At5g62640proline-rich family proteinC.G.S.X.
0.074e-446Hordeum vulgareContig6525_atContig6525--1e-3At5g62640proline-rich family proteinC.G.S.X.
0.023e-242Oryza sativaOs02g0461400AK059308.1-Conserved hypothetical protein2e-1At1g19950HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H))C.G.S.X.
0.045e-654Populus trichocarpaPtpAffx.157213.1.S1_atCV257441hypothetical protein-2e-6At5g62640proline-rich family proteinC.G.S.X.
0.088e-446Triticum aestivumTaAffx.22560.1.S1_atCA656572--2e-4At5g62640proline-rich family proteinC.G.S.X.
0.026e-238Vitis vinifera1619399_s_atCB914618--1e-1At2g30560glycine-rich proteinC.G.S.X.
0.023e-136Zea maysZm.348.3.S1_atAI677540Acidic ribosomal protein P3-2e-1At1g15800unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage