Gene omics information

Query gene ID At5g62500
Gene name ATEB1B (END BINDING PROTEIN 1B)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6277.3At5g62500836370ATEB1B (END BINDING PROTEIN 1B)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.S.X.H.G.
0.4963.5At4g33440829481glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMAVS.X.H.G.
0.4355.3At2g22560816788-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVS.X.H.G.
0.4152.4At5g65090836633BST1 (BRISTLED 1)Encodes a protein involved in root hair morphogenesis and tip growth. Required for restricting both the size of the root-hair initiation site and the width of the root hairs during the transition to tip growth, but, apparently, is not required for normal subsequent tip growth.S.X.H.G.
0.3846.7At4g35500829702protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.3745.0At2g17530816260protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.3643.6At3g12600820440atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)F:hydrolase activity;P:unknown;C:unknown;BMPOFS.X.H.G.
0.3643.6At1g15470838117transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPAS.X.H.G.
0.3338.1At4g23490828447fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3338.1At1g14560838018mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:endomembrane system, mitochondrial inner membrane, membrane;MFPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
110.299.9GSM311295Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
109.199.9GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
80.199.9GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
52.599.8GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
50.399.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.999.8GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
38.799.8GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
33.199.7GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
30.999.7GSM184923Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
28.899.7GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.722e-132472At3g47690823923ATEB1Aencodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.C.G.S.X.
0.055e-446At5g67270836862ATEB1C (microtubule end binding protein 1)encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.C.G.S.X.
0.013e-240At2g39380818523ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2)A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.C.G.S.X.
0.021e-138At3g09880820146ATB' BETAEncodes B' regulatory subunit of PP2A (AtB'beta).C.G.S.X.
0.014e-136At4g33170829454pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBC.G.S.X.
0.014e-136At4g13780827012methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeF:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPVC.G.S.X.
0.012e+034At5g41840834189F-box family proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.012e+034At5g67150836850transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.002e+034At1g70320843368UPL2 (UBIQUITIN-PROTEIN LIGASE 2)encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.343e-27123Glycine maxGmaAffx.41724.2.S1_atBG047062--1e-71At3g47690ATEB1AC.G.S.X.
0.136e-548Hordeum vulgareContig14429_atContig14429--2e-12At3g47690ATEB1AC.G.S.X.
0.094e-654Oryza sativaOs.17881.1.S1_at---0C.G.S.X.
0.163e-27123Populus trichocarpaPtpAffx.148868.1.S1_atBU889057hypothetical protein-4e-39At3g47690ATEB1AC.G.S.X.
0.143e-550Triticum aestivumTa.9651.1.A1_atBJ213208--5e-14At3g47690ATEB1AC.G.S.X.
0.312e-1995Vitis vinifera1622787_atCF607318hypothetical protein LOC100244878-4e-19At5g62500ATEB1B (END BINDING PROTEIN 1B)C.G.S.X.
0.068e-754Zea maysZm.6324.1.A1_atAI586906microtubule-associated protein RP/EB family member 3-1e-14At5g67270ATEB1C (microtubule end binding protein 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009652The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it.
XGO:0009958The orientation of plant parts towards gravity.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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