CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62360

Gene name invertase/pectin methylesterase inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At5g62360 836357 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.33 38.1 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO S.X. H.G.
0.13 5.8 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. S.X. H.G.
0.05 1.1 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.03 0.6 At2g42530 818853 COR15B (COLD REGULATED 15B) F:unknown;P:response to cold;C:chloroplast, chloroplast stroma, chloroplast envelope;PBOMF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
98.3 99.9 E-MEXP-98-raw-cel-320189024
78.7 99.9 E-MEXP-98-raw-cel-320188804
74.6 99.9 GSM131275 AtGen_6-1511_Cold(4°C)-Shoots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
70.8 99.9 GSM131276 AtGen_6-1512_Cold(4°C)-Shoots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
58.4 99.8 GSM131115 AtGen_B-1_1-1-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
58.0 99.8 GSM131116 AtGen_B-2_1-2-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
57.8 99.8 E-MEXP-1725-raw-cel-1669614592
53.5 99.8 E-MEXP-98-raw-cel-320188859
52.1 99.8 GSM131117 AtGen_B-3_1-3-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
51.6 99.8 GSM131121 AtGen_B-7_1-7-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-2 38 At3g13600 820562 calmodulin-binding family protein F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.02 3e-1 36 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV C.G. S.X.
0.02 3e-1 36 At3g01620 821102 glycosyl transferase family 17 protein F:transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity;P:protein amino acid N-linked glycosylation;C:membrane;OPMBFV C.G. S.X.
0.07 3e-1 36 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 3e-1 36 At1g55650 842014 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:unknown;C:chloroplast;MOFP C.G. S.X.
0.01 1e+0 34 At5g35220 833476 EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1) Membrane-associated and ATP-independent metalloprotease; EGY1 protein contains eight trans-membrane domains at its C-terminus, and carries out beta-casein degradation in an ATP-independent manner. EGY1 is required for development of both thylakoid grana and a well-organized lamellae system in chloroplast. Additionally, EGY1 is required for the accumulation of chlorophyll and chlorophyll a/b binding (CAB) proteins (both PS I and PS II) in chloroplast membranes, and for grana formation and normal chloroplast development. Loss of EGY1 function also has an effect on endodermal plastid biogenesis. C.G. S.X.
0.02 1e+0 34 At5g52260 835302 AtMYB19 (myb domain protein 19) Member of the R2R3 factor gene family. C.G. S.X.
0.02 1e+0 34 At3g26710 822283 CCB1 (COFACTOR ASSEMBLY OF COMPLEX C) F:molecular_function unknown;P:cytochrome b6f complex assembly;C:chloroplast;OBP C.G. S.X.
0.01 1e+0 34 At2g23200 816852 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-2 40 Glycine max Gma.11341.2.S1_at BQ081111 - - 5e-21 At4g17900 zinc-binding family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig14429_at Contig14429 - - 2e-12 At3g47690 ATEB1A C.G. S.X.
0.02 9e+0 32 Oryza sativa OsAffx.8975.1.S1_at - - - 0 C.G. S.X.
0.05 2e+0 34 Populus trichocarpa PtpAffx.58139.1.S1_at CV269192 hypothetical protein - 6e-22 At2g01610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.15637.1.S1_at CA502690 - - 3e+0 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1615073_at CD798908 GAGA-binding transcriptional activator BBR/BPC6-like - 1e-40 At5g42520 ATBPC6 C.G. S.X.
0.03 8e+0 30 Zea mays Zm.17720.1.A1_at BM340967 - - 9e-1 At4g12340 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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