CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62340

Gene name invertase/pectin methylesterase inhibitor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g62340 836355 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.75 86.9 At5g48110 834863 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:chloroplast;PMO S.X. H.G.
0.50 65.3 At2g23050 816835 NPY4 (NAKED PINS IN YUC MUTANTS 4) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. S.X. H.G.
0.46 59.8 At4g29690 829090 type I phosphodiesterase/nucleotide pyrophosphatase family protein F:hydrolase activity, catalytic activity;P:metabolic process, nucleotide metabolic process;C:endomembrane system;MBOFPAV S.X. H.G.
0.44 57.2 At2g41800 818779 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
114.8 99.9 GSM226531 L1SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
113.2 99.9 GSM252689 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
110.2 99.9 GSM252687 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep1 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
94.5 99.9 GSM252685 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
90.5 99.9 GSM252688 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
85.6 99.9 GSM252686 Arabidopsis Root from tip to 130 mm proximal to tip (cut 8dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
85.1 99.9 GSM226545 Slice3JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
83.7 99.9 GSM226543 Slice1JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
81.2 99.9 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
74.1 99.9 GSM184891 Arabidopsis, root cells, epidermis and lateral root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 2e-95 349 At5g62330 836354 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.13 8e-2 38 At3g47380 823892 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 1e+0 34 At5g12440 831119 nucleic acid binding / nucleotide binding / zinc ion binding F:nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.02 1e+0 34 At4g30910 829215 cytosol aminopeptidase family protein F:manganese ion binding, metalloexopeptidase activity, aminopeptidase activity;P:proteolysis, protein metabolic process;C:chloroplast;OBMPFA C.G. S.X.
0.03 5e+0 32 At5g47920 834843 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.04 5e+0 32 At5g46770 834720 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 5e+0 32 At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. C.G. S.X.
0.06 5e+0 32 At5g62350 836356 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:response to salt stress;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max PsAffx.C26000001_at PsAffx.C26000001 - - 2e+0 At5g62330 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HV12N24u_s_at HV12N24u - - 4e+0 At5g18180 Gar1 RNA-binding region family protein C.G. S.X.
0.02 6e-1 36 Oryza sativa Os05g0388400 CA762987 - Hypothetical protein 3e-2 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.04 7e+0 32 Populus trichocarpa PtpAffx.212743.1.S1_at pmrna24926 hypothetical protein - 2e+0 At2g38130 ATMAK3 C.G. S.X.
0.04 5e+0 32 Triticum aestivum Ta.19307.1.S1_at CA649973 - - 2e+0 At4g38410 dehydrin, putative C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1611102_at CF603491 hypothetical protein LOC100259129 - 4e-22 At3g58730 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.603.1.A1_at AI715031 - - 1e+1 At5g05430 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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