Gene omics information

Query gene ID At5g62260
Gene name DNA binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.124.9At5g62260836347DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFVOBS.X.H.G.
0.4050.8At5g50300835095xanthine/uracil/vitamin C permease family proteinF:transporter activity;P:transport;C:membrane;BOFAPMS.X.H.G.
0.2217.5At3g04570819613DNA-binding protein-relatedF:unknown;P:biological_process unknown;C:unknown;BPMOFVAS.X.H.G.
0.135.8At4g12080826816DNA-binding family proteinF:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBVS.X.H.G.
0.071.9At5g18860832004inosine-uridine preferring nucleoside hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
265.0100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
96.399.9GSM184916Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
70.799.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.899.8GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.899.8GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
58.499.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
53.699.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
52.999.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.399.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.122e-757At4g25320828635DNA-binding protein-relatedF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.044e-550At4g00200828162DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBOC.G.S.X.
0.024e-550At1g11440837686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.042e-448At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.052e-448At2g30280817578unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
0.012e-448At1g55390841986DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVAC.G.S.X.
0.042e-448At1g18750838457AGL65 (AGAMOUS-LIKE 65)Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth.C.G.S.X.
0.066e-446At5g51590835233DNA-binding protein-relatedF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-552Glycine maxGmaAffx.82466.1.S1_atBM094108--2e-23At5g51590DNA-binding protein-relatedC.G.S.X.
0.045e-342Hordeum vulgareHVSMEl0003G02r2_atHVSMEl0003G02r2--1e-3At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.053e-448Oryza sativaOs08g0118000AK068379.1-HMG-I and HMG-Y, DNA-binding domain containingprotein2e-8At4g12080DNA-binding family proteinC.G.S.X.
0.143e-25117Populus trichocarpaPtpAffx.30956.1.A1_atCV254843hypothetical protein-1e-25At5g62260DNA bindingC.G.S.X.
0.042e-448Triticum aestivumTaAffx.65594.1.S1_atBJ236677--1e+0At5g43410ethylene-responsive factor, putativeC.G.S.X.
0.033e-342Vitis vinifera1621975_atCB912729hypothetical protein LOC100254577-2e-2At4g00200DNA bindingC.G.S.X.
0.037e-238Zea maysZm.2566.1.S1_atBM079352--6e-7At5g56950NAP1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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