CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62260

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At5g62260 836347 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFVOB S.X. H.G.
0.40 50.8 At5g50300 835095 xanthine/uracil/vitamin C permease family protein F:transporter activity;P:transport;C:membrane;BOFAPM S.X. H.G.
0.22 17.5 At3g04570 819613 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;BPMOFVA S.X. H.G.
0.13 5.8 At4g12080 826816 DNA-binding family protein F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV S.X. H.G.
0.07 1.9 At5g18860 832004 inosine-uridine preferring nucleoside hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:cell wall;BOMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
265.0 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.3 99.9 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
70.7 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
66.8 99.8 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.8 99.8 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.8 99.8 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
58.4 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
53.6 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
52.9 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
52.3 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 2e-7 57 At4g25320 828635 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.04 4e-5 50 At4g00200 828162 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
0.02 4e-5 50 At1g11440 837686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.04 2e-4 48 At3g17160 820973 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.05 2e-4 48 At2g30280 817578 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.01 2e-4 48 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA C.G. S.X.
0.04 2e-4 48 At1g18750 838457 AGL65 (AGAMOUS-LIKE 65) Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL65 is expressed in pollen.It forms heterodimers with other MICK family members (AGL104). Involved in late stages of pollen development and pollen tube growth. C.G. S.X.
0.06 6e-4 46 At5g51590 835233 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-5 52 Glycine max GmaAffx.82466.1.S1_at BM094108 - - 2e-23 At5g51590 DNA-binding protein-related C.G. S.X.
0.04 5e-3 42 Hordeum vulgare HVSMEl0003G02r2_at HVSMEl0003G02r2 - - 1e-3 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.05 3e-4 48 Oryza sativa Os08g0118000 AK068379.1 - HMG-I and HMG-Y, DNA-binding domain containingprotein 2e-8 At4g12080 DNA-binding family protein C.G. S.X.
0.14 3e-25 117 Populus trichocarpa PtpAffx.30956.1.A1_at CV254843 hypothetical protein - 1e-25 At5g62260 DNA binding C.G. S.X.
0.04 2e-4 48 Triticum aestivum TaAffx.65594.1.S1_at BJ236677 - - 1e+0 At5g43410 ethylene-responsive factor, putative C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1621975_at CB912729 hypothetical protein LOC100254577 - 2e-2 At4g00200 DNA binding C.G. S.X.
0.03 7e-2 38 Zea mays Zm.2566.1.S1_at BM079352 - - 6e-7 At5g56950 NAP1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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