CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62160

Gene name AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family S.X. H.G.
0.61 76.7 At2g33260 817889 tryptophan/tyrosine permease family protein F:L-tyrosine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF S.X. H.G.
0.38 46.7 At5g46310 834674 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FP S.X. H.G.
0.27 26.2 At4g05620 825934 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.26 24.4 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
488.7 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
278.0 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
115.9 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.0 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
95.1 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.9 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.3 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
85.4 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
82.5 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
81.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 6e-4 46 At1g05300 837029 ZIP5 member of Fe(II) transporter isolog family C.G. S.X.
0.03 9e-3 42 At2g30080 817559 ZIP6 member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. C.G. S.X.
0.05 9e-3 42 At2g32270 817787 ZIP3 A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency. C.G. S.X.
0.03 3e-2 40 At5g26100 832679 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.03 3e-2 40 At1g60960 842387 IRT3 member of Fe(II) transporter isolog family C.G. S.X.
0.01 1e-1 38 At4g38350 829992 hedgehog receptor F:hedgehog receptor activity;P:unknown;C:plasma membrane, vacuole, membrane;MOFPBA C.G. S.X.
0.01 5e-1 36 At1g09170 837437 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPB C.G. S.X.
0.01 5e-1 36 At1g68930 843226 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-7 56 Glycine max Gma.6141.1.S1_at BM523097 - - 2e-18 At1g60960 IRT3 C.G. S.X.
0.04 1e+0 34 Hordeum vulgare Contig26252_at Contig26252 - - 1e+0 At4g19680 IRT2 C.G. S.X.
0.02 4e+0 34 Oryza sativa Os08g0207500 AK105258.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 6e-2 At4g19680 IRT2 C.G. S.X.
0.06 1e-2 42 Populus trichocarpa PtpAffx.212974.1.S1_s_at pmrna25380 ZIP transporter /// ZIP transporter /// ZIP transporter - 2e-12 At1g31260 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) C.G. S.X.
0.04 2e+0 34 Triticum aestivum TaAffx.106421.1.S1_at CD933478 zinc transporter ZIP - 3e+0 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.06 1e-5 50 Vitis vinifera 1618682_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.02 1e-2 40 Zea mays Zm.5031.1.A1_at AI600468 - - 2e-2 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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