CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g62020

Gene name AT-HSFB2A

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.09 2.8 At5g62020 836322 AT-HSFB2A member of Heat Stress Transcription Factor (Hsf) family S.X. H.G.
0.33 38.1 At3g05200 819684 ATL6 Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). S.X. H.G.
0.17 10.2 At3g54200 824587 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane;P S.X. H.G.
0.09 2.8 At1g19770 838565 ATPUP14 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.05 1.1 At4g36030 829759 ARO3 (ARMADILLO REPEAT ONLY 3) Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.3 99.8 E-MEXP-1443-raw-cel-1581869921
40.1 99.8 GSM131450 AtGen_6-9222_Heatstress-Roots-1.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
36.9 99.7 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
34.2 99.7 GSM131449 AtGen_6-9221_Heatstress-Roots-1.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
32.1 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.1 99.7 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.8 99.6 GSM131454 AtGen_6-9322_Heatstress-Roots-3.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
22.7 99.6 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
21.8 99.6 GSM131453 AtGen_6-9321_Heatstress-Roots-3.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
21.6 99.6 E-MEXP-807-raw-cel-1173273170
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 2e-18 93 At1g46264 841110 AT-HSFB4 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.11 9e-18 91 At4g11660 826771 AT-HSFB2B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.13 5e-13 75 At4g36990 829853 HSF4 (HEAT SHOCK FACTOR 4) encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. C.G. S.X.
0.08 5e-10 65 At1g67970 843125 AT-HSFA8 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.04 3e-5 50 At5g03720 831749 AT-HSFA3 Member of Heat Stress Transcription Factor (Hsf) family. Expression is regulated by DREB2A and in turn HSFA3 regulates the expression of hsps Hsp18.1-CI and Hsp26.5-MII35S. Involved in establishing thermotolerence. C.G. S.X.
0.02 3e-5 50 At4g17750 827496 HSF1 (HEAT SHOCK FACTOR 1) native protein is a trimer, interacts with HSP70, also with TBP, DNA interaction is modulated by phosphorylation and is heat-shock inducible C.G. S.X.
0.05 3e-5 50 At2g26150 817155 ATHSFA2 member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. C.G. S.X.
0.04 1e-4 48 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.07 1e-4 48 At3g02990 821162 ATHSFA1E member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-21 103 Glycine max GmaAffx.56241.1.S1_at BG840046 - - 1e-21 At5g62020 AT-HSFB2A C.G. S.X.
0.04 2e-4 46 Hordeum vulgare Contig6968_at Contig6968 - - 8e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.05 1e-3 46 Oryza sativa Os09g0526600 AK106545.1 - Heat shock factor protein 3 (HSF 3) (Heat shocktranscription factor 3) (HSTF 3) 4e-6 At1g46264 AT-HSFB4 C.G. S.X.
0.25 5e-20 99 Populus trichocarpa PtpAffx.213073.1.S1_at pmrna25586 hypothetical protein - 1e-20 At5g62020 AT-HSFB2A C.G. S.X.
0.04 5e-4 46 Triticum aestivum TaAffx.95561.1.S1_at CA657041 - - 7e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.06 3e-2 38 Vitis vinifera 1610122_at CF517531 - - 4e-24 At2g26150 ATHSFA2 C.G. S.X.
0.06 2e-4 46 Zea mays Zm.2008.1.A1_at CF623731 hypothetical protein LOC100279662 - 8e-8 At3g02990 ATHSFA1E C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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