Gene omics information

Query gene ID At5g61970
Gene name signal recognition particle-related / SRP-related
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g61970836318signal recognition particle-related / SRP-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBAS.X.H.G.
0.6781.6At5g11980831071conserved oligomeric Golgi complex component-related / COG complex component-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.6075.7At3g26370822241unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PS.X.H.G.
0.4355.3At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPS.X.H.G.
0.3643.6At5g65950836725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
18.799.5GSM142735DH001_ATH1_A2-BCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
17.999.5GSM142734DH001_ATH1_A1-UNM1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
13.399.4GSM142738DH001_ATH1_A5-BCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
10.699.2GSM142737DH001_ATH1_A4-UNM2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
10.299.2GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
9.899.1GSM133979Birnbaum_1-9_StageII-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
9.099.1GSM134202Murray_3-1_D1-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
8.499.0GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
8.399.0GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
8.299.0GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-138At1g20110838600zinc finger (FYVE type) family proteinF:phosphoinositide binding;P:signal transduction;C:unknown;MFOPBVAC.G.S.X.
0.012e-138At1g31000839986F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.019e-136At5g20520832174WAV2 (WAVY GROWTH 2)Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).C.G.S.X.
0.019e-136At3g28840822516unknown proteinF:unknown;P:unknown;C:endomembrane system;BOMPFVAC.G.S.X.
0.019e-136At2g24960817035unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.019e-136At1g14370837999APK2A (PROTEIN KINASE 2A)Encodes protein kinase APK2a.C.G.S.X.
0.019e-136At1g12860837843SCRM2 (SCREAM 2)Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.C.G.S.X.
0.019e-136At1g13200837880F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.133e-757Glycine maxGma.9743.1.S1_atCB063532--8e-8At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.128e-1581Hordeum vulgareContig8893_atContig8893--2e-14At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.081e-450Oryza sativaOs08g0323000AK064573.1-Conserved hypothetical protein5e-5At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.252e-24115Populus trichocarpaPtpAffx.120844.1.A1_atCV262845hypothetical protein-8e-25At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.103e-1687Triticum aestivumTa.6255.1.S1_atCK167744--3e-16At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.045e-961Vitis vinifera1617603_atBQ797541hypothetical protein LOC100262919-5e-9At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
0.093e-1789Zea maysZm.1337.1.A1_atCK371106hypothetical protein LOC100192526-9e-17At5g61970signal recognition particle-related / SRP-relatedC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03060Link to KEGG PATHWAYProtein export
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