Gene omics information

Query gene ID At5g61900
Gene name BON1 (BONZAI 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.146.8At5g61900836311BON1 (BONZAI 1)Encodes a plasma-membrane localized, copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Mutants exhibit temperature-sensitive growth defects and increased hypersensitive response where permissive conditions are low temperature (22 degrees Celsius) and low humidity. Gene is expressed at 22 but not at 28 (restrictive condition) degrees. Lethality of double mutants with BON3 can be partially suppressed by SNC1. Double mutants show defects in development that are genetically separable from hypersensitive/cell death response.S.X.H.G.
0.4659.8At1g14540838016anionic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.4457.2At5g12340831109unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.2930.3At1g22810838887AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.S.X.H.G.
0.2726.2At1g69930843329ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
317.6100.0E-MEXP-807-raw-cel-1173273088
277.2100.0E-MEXP-807-raw-cel-1173273116
238.2100.0E-MEXP-807-raw-cel-1173273170
235.1100.0E-MEXP-807-raw-cel-1173273060
227.1100.0E-MEXP-807-raw-cel-1173273223
218.6100.0E-MEXP-807-raw-cel-1173273252
202.4100.0E-MEXP-807-raw-cel-1173273196
192.6100.0E-MEXP-807-raw-cel-1173273144
138.099.9GSM131321AtGen_6-3421_Saltstress-Roots-6.0h_Rep1GSE5623AtGenExpress: Stress Treatments (Salt stress)
88.399.9GSM131322AtGen_6-3422_Saltstress-Roots-6.0h_Rep2GSE5623AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.779e-149527At5g07300830621BON2 (BONZAI 2)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms.C.G.S.X.
0.031e-242At1g08860837408BON3 (BONZAI 3)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.C.G.S.X.
0.012e-138At5g17880831656CSA1 (constitutive shade-avoidance1)Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.C.G.S.X.
0.022e-138At5g37475833725translation initiation factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBC.G.S.X.
0.012e-138At3g26720822284glycosyl hydrolase family 38 proteinF:in 6 functions;P:mannose metabolic process, carbohydrate metabolic process;C:plasma membrane, vacuole, plant-type cell wall;MOPBFAC.G.S.X.
0.012e-138At1g06230837133GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4)This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.264e-22107Glycine maxGma.10127.1.S1_atBU546819--4e-26At5g07300BON2 (BONZAI 2)C.G.S.X.
0.027e+032Hordeum vulgareHB10F07r_atHB10F07r--2e+0At1g24430transferase/ transferase, transferring acyl groups other than amino-acyl groupsC.G.S.X.
0.071e-140Oryza sativaOs05g03733009633.m02818-C2 domain containing protein9e-4At1g08860BON3 (BONZAI 3)C.G.S.X.
0.224e-31137Populus trichocarpaPtpAffx.212930.1.S1_s_atpmrna25295hypothetical protein-1e-30At5g07300BON2 (BONZAI 2)C.G.S.X.
0.024e+034Triticum aestivumTaAffx.84902.1.S1_atCA627376--6e+0At5g19473-C.G.S.X.
0.021e+034Vitis vinifera1615961_atCB344451hypothetical protein LOC100241886-7e-5At4g35250vestitone reductase-relatedC.G.S.X.
0.042e+034Zea maysZm.9280.1.A1_atBM336932--1e+0At5g61900BON1 (BONZAI 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0060548Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
XGO:0019725Any process involved in the maintenance of an internal equilibrium at the level of the cell.
XGO:0009266A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
XGO:0009270A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere.
XGO:0045793Any process that increases cell size.
NGO:0009626The rapid, localized death of plant cells in response to invasion by a pathogen.
NGO:0010186Any process that activates or increases the frequency, rate or extent of cellular defense response.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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