CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61820

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At5g61820 836304 - F:molecular_function unknown;P:biological_process unknown;C:vacuole;PO S.X. H.G.
0.44 57.2 At4g23050 828404 protein kinase, putative F:protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOFBVA S.X. H.G.
0.40 50.8 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. S.X. H.G.
0.33 38.1 At5g64250 836546 2-nitropropane dioxygenase family / NPD family F:oxidoreductase activity, catalytic activity;P:response to cadmium ion, response to symbiotic fungus, metabolic process;C:unknown;BOFPMA S.X. H.G.
0.14 6.8 At4g26080 828714 ABI1 (ABA INSENSITIVE 1) Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.3 99.7 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
27.9 99.7 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
26.4 99.7 E-MEXP-1443-raw-cel-1581869921
25.2 99.6 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
24.0 99.6 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
23.8 99.6 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
23.4 99.6 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
23.1 99.6 GSM184914 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
21.9 99.6 E-MEXP-1443-raw-cel-1581869688
21.0 99.6 GSM184913 Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At4g35240 829677 unknown protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBV C.G. S.X.
0.01 2e-1 38 At4g37100 829864 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:plasma membrane;PMFOBA C.G. S.X.
0.01 7e-1 36 At5g55020 835593 MYB120 (MYB DOMAIN PROTEIN 120) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB120). C.G. S.X.
0.01 7e-1 36 At5g49070 834966 KCS21 (3-KETOACYL-COA SYNTHASE 21) Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 7e-1 36 At3g05170 819681 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;BFOPMA C.G. S.X.
0.01 7e-1 36 At2g44730 819080 transcription factor F:transcription factor activity;P:regulation of transcription;C:chloroplast;PMOBFV C.G. S.X.
0.00 3e+0 34 At5g23110 832375 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVB C.G. S.X.
0.01 3e+0 34 At5g02230 831784 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-2 40 Glycine max GmaAffx.88309.1.S1_at BQ296146 - - 6e-2 At1g78100 F-box family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig15148_at Contig15148 - - 5e-5 At5g24360 IRE1-1 (INOSITOL REQUIRING 1-1) C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.2727.1.S1_at - - - 0 C.G. S.X.
0.06 7e-8 59 Populus trichocarpa PtpAffx.10695.1.A1_at CV255466 hypothetical protein - 3e-8 At5g61820 - C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.6061.1.S1_at CA692220 - - 1e+1 At5g61440 ACHT5 (ATYPICAL CYS HIS RICH THIOREDOXIN 5) C.G. S.X.
0.11 2e-7 56 Vitis vinifera 1619981_at CB004603 similar to MtN19-like protein - 8e-7 At5g61820 - C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.1312.1.S1_at 40794996-140 - - 3e+0 At4g01595 ATP binding / MAP kinase/ protein kinase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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