CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61720

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.78 88.6 At5g61720 836294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM S.X. H.G.
0.95 97.0 At1g02790 839391 PGA4 (POLYGALACTURONASE 4) encodes a exopolygalacturonase. S.X. H.G.
0.93 96.4 At1g61563 842451 RALFL8 (ralf-like 8) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. S.X. H.G.
0.93 96.4 At3g57690 824938 AGP23 (ARABINOGALACTAN-PROTEIN 23) Encodes a putative arabinogalactan-protein (AGP23). S.X. H.G.
0.93 96.4 At3g62170 825390 VGDH2 (Vanguard 1 homolog 2) F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.92 96.0 At3g20865 821635 AGP40 (arabinogalactan-protein 40) Encodes a putative arabinogalactan-protein (AGP40). S.X. H.G.
0.92 96.0 At3g01270 821142 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO S.X. H.G.
0.92 96.0 At5g14380 831289 AGP6 (Arabinogalactan proteins 6) Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth. S.X. H.G.
0.91 95.6 At3g28750 822507 unknown protein F:unknown;P:unknown;C:endomembrane system;PO S.X. H.G.
0.90 95.1 At5g19580 832078 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
111.1 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
108.9 99.9 E-MEXP-1138-raw-cel-1432773226
108.3 99.9 E-MEXP-1138-raw-cel-1432773290
99.4 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
98.8 99.9 E-MEXP-1138-raw-cel-1432773258
93.5 99.9 E-MEXP-1138-raw-cel-1432773162
92.3 99.9 E-MEXP-1138-raw-cel-1432773194
91.3 99.9 E-MEXP-1138-raw-cel-1432773322
89.5 99.9 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
89.2 99.9 E-MEXP-1138-raw-cel-1432772650
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-3 44 At3g28780 822510 unknown protein F:molecular_function unknown;P:pollen exine formation;C:endomembrane system;BOMPFVA C.G. S.X.
0.02 1e-1 38 At2g21960 816732 unknown protein F:unknown;P:unknown;C:chloroplast;PBO C.G. S.X.
0.02 1e-1 38 At1g11210 837662 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO C.G. S.X.
0.01 6e-1 36 At3g09570 820114 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;MPOFB C.G. S.X.
0.03 6e-1 36 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. C.G. S.X.
0.02 2e+0 34 At5g04820 830361 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) F:unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e+0 34 At5g11800 831053 KEA6 member of Putative potassium proton antiporter family C.G. S.X.
0.01 2e+0 34 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Glycine max GmaAffx.86182.1.S1_at BG047463 - - 2e-7 At5g18520 - C.G. S.X.
0.02 7e-2 38 Hordeum vulgare HU12I24r_at HU12I24r - - 9e-1 At5g42520 ATBPC6 C.G. S.X.
0.02 3e-1 38 Oryza sativa Os05g0481000 AK059369.1 - Serine/threonine protein phosphatase 2B catalyticsubunit, beta isoform (EC 3.1.3.16) (Calmodulin-dependentcalcineurin A subunit, beta isoform) (CAM-PRP catalyticsubunit). Splice isoform 2 1e-17 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) C.G. S.X.
0.02 8e-1 36 Populus trichocarpa PtpAffx.26294.1.S1_at CK094894 - - 4e-1 At1g74930 ORA47 C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.105430.1.S1_at CA734599 - - 2e-2 At5g61720 unknown protein C.G. S.X.
0.04 3e+0 32 Vitis vinifera 1617697_at CD714002 - - 1e-25 At4g27800 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) C.G. S.X.
0.01 4e+0 32 Zea mays Zm.16922.1.A1_a_at CD998944 hypothetical protein LOC100192809 /// hypothetical protein LOC100193683 - 3e-49 At1g79210 20S proteasome alpha subunit B, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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