CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61660

Gene name glycine-rich protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g61660 836288 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA S.X. H.G.
0.57 73.8 At5g08410 830739 FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2) F:ferredoxin:thioredoxin reductase activity, lipoate synthase activity, catalytic activity, ferredoxin reductase activity;P:photosynthesis, light reaction, lipoate biosynthetic process, photosynthesis;C:chloroplast;BPO S.X. H.G.
0.57 73.8 At1g19740 838563 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF S.X. H.G.
0.56 73.0 At5g19250 832045 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.56 73.0 At1g06460 837158 ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 32.1) ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins. S.X. H.G.
0.55 70.6 At5g65840 836713 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PMBOF S.X. H.G.
0.54 69.5 At3g10520 820216 AHB2 (ARABIDOPSIS HAEMOGLOBIN 2) class 2 non-symbiotic hemoglobin S.X. H.G.
0.54 69.5 At1g21065 838701 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOAFPM S.X. H.G.
0.52 67.4 At1g76020 843933 - F:unknown;P:biological_process unknown;C:cell wall, vacuole;BPOMF S.X. H.G.
0.51 66.3 At4g34950 829647 nodulin family protein F:unknown;P:unknown;C:unknown;OBPFAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
130.4 99.9 E-MEXP-509-raw-cel-829148703
36.1 99.7 E-TABM-62-raw-cel-720981046
25.8 99.7 E-TABM-62-raw-cel-720981923
25.1 99.6 GSM131528 ATGE_19_A GSE5630 AtGenExpress: Developmental series (leaves)
24.5 99.6 E-TABM-62-raw-cel-720980002
18.9 99.5 GSM131530 ATGE_19_C GSE5630 AtGenExpress: Developmental series (leaves)
18.2 99.5 GSM131529 ATGE_19_B GSE5630 AtGenExpress: Developmental series (leaves)
17.2 99.5 E-TABM-61-raw-cel-683343600
16.9 99.5 GSM133033 CT182-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
16.3 99.5 GSM128712 Thorlby_1-1_cold-acclimated_REP3_ATH1 GSE5524 Gene Expression During Recovery from Freezing
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 8e-1 34 At1g02530 839282 PGP12 (P-GLYCOPROTEIN 12) F:ATPase activity, coupled to transmembrane movement of substances;P:response to cyclopentenone;C:integral to membrane;BOMAFPV C.G. S.X.
0.02 3e+0 32 At5g59740 836095 UDP-galactose/UDP-glucose transporter-related F:galactose transmembrane transporter activity;P:unknown;C:unknown;MFPOB C.G. S.X.
0.01 3e+0 32 At5g56360 835736 calmodulin-binding protein F:calmodulin binding;P:unknown;C:endomembrane system;MOBFPVA C.G. S.X.
0.01 3e+0 32 At5g13950 831243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB C.G. S.X.
0.02 3e+0 32 At4g36970 829851 remorin family protein F:DNA binding;P:unknown;C:plasma membrane, chloroplast;POMFB C.G. S.X.
0.01 3e+0 32 At2g46920 819306 POL (poltergeist) Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS. C.G. S.X.
0.01 3e+0 32 At1g48920 841314 ATNUC-L1 Encodes the predominant form of the two nucleolin proteins found in Arabidopsis. This protein is involved in rRNA processing, ribosome biosynthesis, and vascular pattern formation. PARL1 localizes to the nucleolus and parl1 mutants accumulate elevated levels of the unspliced 35S pre-rRNA. parl1 mutants also have defects in cotyledon, leaf, sepal, and petal vein patterning and have reduced stature, reduced fertility, increased bushiness, and reduced root length. The sugar-induced expression of ribosome proteins is also reduced in parl1 mutants. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-3 44 Glycine max Gma.17558.1.S1_at BG508180 - - 8e-4 At5g61660 glycine-rich protein C.G. S.X.
0.03 6e+0 30 Hordeum vulgare Contig6817_at Contig6817 - - 2e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) C.G. S.X.
0.07 1e-1 38 Oryza sativa Os02g0210400 9630.m01076 - - 2e-2 At5g61660 glycine-rich protein C.G. S.X.
0.07 1e+0 34 Populus trichocarpa PtpAffx.215318.1.S1_s_at pmrna29438 hypothetical protein - 1e+0 At5g61660 glycine-rich protein C.G. S.X.
0.05 1e+1 30 Triticum aestivum TaAffx.93474.1.S1_at BJ209155 - - 1e+0 At5g25540 CID6 (CTC-Interacting Domain 6) C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1617210_at CB976951 - - 2e-1 At1g70030 paired amphipathic helix repeat-containing protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.443.1.S1_at AF031083.2 aluminum-induced protein - 1e-1 At5g46730 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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