CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61640

Gene name PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g61640 836286 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) ubiquitous enzyme that repairs oxidatively damaged proteins S.X. H.G.
0.22 17.5 At4g16190 827311 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:vacuole;MOPVBAF S.X. H.G.
0.13 5.8 At5g14680 831320 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOF S.X. H.G.
0.11 4.1 At1g01820 839257 PEX11C (PEROXIN 11C) member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. S.X. H.G.
0.10 3.4 At3g01170 820469 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;P S.X. H.G.
0.09 2.8 At3g60590 825230 unknown protein F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PBO S.X. H.G.
0.04 0.9 At3g23600 821939 dienelactone hydrolase family protein F:hydrolase activity;P:response to salt stress;C:apoplast, nucleus, plasma membrane, cytoplasm;FBPMOA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.1 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.2 99.6 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
24.2 99.6 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
22.7 99.6 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
22.2 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.0 99.6 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.4 99.6 GSM260955 A2-LLOYD-PHO_REP2 GSE10326 Transcriptome analysis of pho3
19.2 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.3 99.5 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
17.1 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 1e-58 226 At5g07470 830638 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) ubiquitous enzyme that repairs oxidatively damaged proteins C.G. S.X.
0.52 3e-29 129 At5g07460 830637 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness. C.G. S.X.
0.13 2e-8 59 At4g25130 828616 peptide methionine sulfoxide reductase, putative F:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAV C.G. S.X.
0.02 3e-1 36 At5g27830 832845 - F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOP C.G. S.X.
0.01 1e+0 34 At4g11110 826712 SPA2 (SPA1-RELATED 2) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. C.G. S.X.
0.01 1e+0 34 At2g22400 816771 NOL1/NOP2/sun family protein F:unknown;P:unknown;C:cellular_component unknown;BOMFAP C.G. S.X.
0.02 1e+0 34 At2g17440 816250 leucine-rich repeat family protein F:protein binding;P:unknown;C:plasma membrane;MPBOFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-10 67 Glycine max Gma.2339.1.S1_at CD393491 - - 5e-26 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) C.G. S.X.
0.06 6e-7 54 Hordeum vulgare Contig7267_at Contig7267 - - 1e-3 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) C.G. S.X.
0.06 4e-2 40 Oryza sativa Os10g0563600 AK109715.1 - Peptide methionine sulfoxide reductase (EC1.8.4.6) (Protein- methionine-S-oxide reductase) (PeptideMet(O) reductase) 2e-1 At3g47550 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.05 3e-2 40 Populus trichocarpa PtpAffx.71886.2.S1_at BU881886 methionine sulfoxide reductase type /// methionine sulfoxide reductase type - 1e-14 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) C.G. S.X.
0.06 3e-4 46 Triticum aestivum Ta.8368.2.S1_at CA624505 - - 2e-4 At5g61640 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) C.G. S.X.
0.10 1e-3 42 Vitis vinifera 1608888_at CF208466 hypothetical protein LOC100258013 - 2e-13 At4g25130 peptide methionine sulfoxide reductase, putative C.G. S.X.
0.12 2e-3 42 Zea mays Zm.13703.1.A1_at CF007380 peptide methionine sulfoxide reductase - 9e-3 At5g61640 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
N GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage