Gene omics information

Query gene ID At5g61640
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g61640836286PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)ubiquitous enzyme that repairs oxidatively damaged proteinsS.X.H.G.
0.2217.5At4g16190827311cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:vacuole;MOPVBAFS.X.H.G.
0.135.8At5g14680831320universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;BPAMOFS.X.H.G.
0.114.1At1g01820839257PEX11C (PEROXIN 11C)member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.S.X.H.G.
0.103.4At3g01170820469structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PS.X.H.G.
0.092.8At3g60590825230unknown proteinF:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PBOS.X.H.G.
0.040.9At3g23600821939dienelactone hydrolase family proteinF:hydrolase activity;P:response to salt stress;C:apoplast, nucleus, plasma membrane, cytoplasm;FBPMOAS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.299.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.799.6GSM133736Buchanan-Wollaston_A-8-bwoll-Ei2_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
19.499.6GSM260955A2-LLOYD-PHO_REP2GSE10326Transcriptome analysis of pho3
18.399.5GSM133737Buchanan-Wollaston_A-9-bwoll-Co1_SLDGSE5727The effects of mutants in stress response pathways on gene expression during senescence
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.761e-58226At5g07470830638PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)ubiquitous enzyme that repairs oxidatively damaged proteinsC.G.S.X.
0.523e-29129At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.C.G.S.X.
0.132e-859At4g25130828616peptide methionine sulfoxide reductase, putativeF:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAVC.G.S.X.
0.023e-136At5g27830832845-F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOPC.G.S.X.
0.011e+034At4g11110826712SPA2 (SPA1-RELATED 2)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants.C.G.S.X.
0.011e+034At2g22400816771NOL1/NOP2/sun family proteinF:unknown;P:unknown;C:cellular_component unknown;BOMFAPC.G.S.X.
0.021e+034At2g17440816250leucine-rich repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MPBOFVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.131e-1067Glycine maxGma.2339.1.S1_atCD393491--5e-26At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)C.G.S.X.
0.066e-754Hordeum vulgareContig7267_atContig7267--1e-3At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)C.G.S.X.
0.064e-240Oryza sativaOs10g0563600AK109715.1-Peptide methionine sulfoxide reductase (EC1.8.4.6) (Protein- methionine-S-oxide reductase) (PeptideMet(O) reductase)2e-1At3g47550zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.053e-240Populus trichocarpaPtpAffx.71886.2.S1_atBU881886methionine sulfoxide reductase type /// methionine sulfoxide reductase type-1e-14At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)C.G.S.X.
0.063e-446Triticum aestivumTa.8368.2.S1_atCA624505--2e-4At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)C.G.S.X.
0.101e-342Vitis vinifera1608888_atCF208466hypothetical protein LOC100258013-2e-13At4g25130peptide methionine sulfoxide reductase, putativeC.G.S.X.
0.122e-342Zea maysZm.13703.1.A1_atCF007380peptide methionine sulfoxide reductase-9e-3At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)C.G.S.X.
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Biological processes

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ECCGO IDProcess Name
CGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
NGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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