CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61590

Gene name AP2 domain-containing transcription factor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g61590 836280 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.91 95.6 At1g23390 838947 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.83 91.4 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.57 73.8 At1g49500 841374 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.40 50.8 At5g08330 830730 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOB S.X. H.G.
0.38 46.7 At4g05070 825849 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.1 99.6 E-ATMX-30-raw-cel-1513696930
18.8 99.5 GSM142641 MC002_ATH1_A7.1-dubos-wLh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
13.5 99.4 GSM128728 Pieterse_1-14_Mpersicae-72h_Rep1_ATH1 GSE5525 Transcriptome changes of Arabidopsis during pathogen and insect attack
13.0 99.4 GSM268247 WT-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
11.8 99.3 GSM142644 MC002_ATH1_A8.1-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.8 99.3 GSM142646 MC002_ATH1_A8.3-dubos-aih GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.7 99.3 E-TABM-126-raw-cel-1242543369
11.6 99.3 GSM133036 CT482-2 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
11.3 99.3 GSM133035 CT482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
11.2 99.2 E-TABM-62-raw-cel-720983041
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 3e-44 178 At5g07580 830651 DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.14 1e-9 63 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.12 3e-7 56 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box�dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. C.G. S.X.
0.07 3e-7 56 At4g17490 827463 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.08 2e-5 50 At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.07 8e-5 48 At3g23230 821901 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.06 3e-4 46 At2g31230 817680 ATERF15 (Ethylene-responsive element binding factor 15) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.06 5e-3 42 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. C.G. S.X.
0.02 2e-2 40 At4g16420 827336 ADA2B (HOMOLOG OF YEAST ADA2 2B) Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-9 63 Glycine max GmaAffx.83655.1.S1_at AW185128 - - 2e-9 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig24754_at Contig24754 - - 2e-1 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.02 2e+0 34 Oryza sativa OsAffx.25589.1.S1_at - - - 0 C.G. S.X.
0.11 7e-9 61 Populus trichocarpa PtpAffx.201660.1.S1_at pmrna3314 AP2/ERF domain-containing transcription factor - 2e-3 At3g23220 DNA binding / transcription factor C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.13384.1.A1_at BG904497 - - 2e-1 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.09 2e-5 48 Vitis vinifera 1621080_at CF568964 - - 1e-18 At1g28360 ERF12 (ERF DOMAIN PROTEIN 12) C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.1534.1.S1_at 40794996-126 - - 9e+0 At5g52730 heavy-metal-associated domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage