CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61560

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At5g61560 836277 protein kinase family protein F:in 6 functions;P:protein amino acid phosphorylation, protein ubiquitination;C:chloroplast, plasma membrane;MPOBFVA S.X. H.G.
0.61 76.7 At3g22060 821768 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain S.X. H.G.
0.53 68.6 At5g01540 831722 LECRKA4.1 (LECTIN RECEPTOR KINASE A4.1) Encodes LecRKA4.1, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. S.X. H.G.
0.48 62.5 At2g39200 818505 MLO12 (MILDEW RESISTANCE LOCUS O 12) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.44 57.2 At2g42360 818837 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.40 50.8 At5g48540 834910 33 kDa secretory protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.38 46.7 At4g01250 827896 WRKY22 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.33 38.1 At2g27660 817312 DC1 domain-containing protein F:zinc ion binding;P:unknown;C:chloroplast;BPMOFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
227.1 100.0 E-MEXP-807-raw-cel-1173272948
122.1 99.9 E-MEXP-1443-raw-cel-1581869863
109.6 99.9 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
104.8 99.9 E-MEXP-1443-raw-cel-1581869921
88.9 99.9 E-MEXP-807-raw-cel-1173273252
87.8 99.9 E-MEXP-807-raw-cel-1173273170
80.3 99.9 E-MEXP-807-raw-cel-1173273223
78.8 99.9 GSM142851 MG001_ATH1_A4-Torres-2N1 GSE6176 Impact of Type III effectors on plant defense responses
76.2 99.9 E-MEXP-1094-raw-cel-1379507313
76.0 99.9 E-MEXP-1094-raw-cel-1379507273
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 2e-11 71 At5g61550 836276 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.02 2e-5 52 At5g35380 833499 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 1e-3 46 At5g26150 832684 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.03 2e-2 42 At4g25160 828619 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.01 2e-2 42 At3g27560 822378 ATN1 encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. C.G. S.X.
0.01 8e-2 40 At3g48260 823984 WNK3 Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. C.G. S.X.
0.01 8e-2 40 At1g63100 842613 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMB C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-2 42 Glycine max GmaAffx.44825.1.S1_at BE821683 - - 4e-3 At5g61560 protein kinase family protein C.G. S.X.
0.01 4e-2 40 Hordeum vulgare Contig2340_at Contig2340 - - 7e-12 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.01 2e-1 40 Oryza sativa Os07g0257100 9635.m01529 - - 3e+0 At2g43870 polygalacturonase, putative / pectinase, putative C.G. S.X.
0.03 1e-1 40 Populus trichocarpa PtpAffx.206663.1.S1_at pmrna13224 hypothetical protein - 5e-19 At5g26150 protein kinase family protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.113234.1.S1_at CA617049 - - 1e+0 At3g15280 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1615111_at CD721525 - - 2e-2 At5g47790 forkhead-associated domain-containing protein / FHA domain-containing protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.1146.1.A1_at AW400130 - - 3e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0016567 The process by which one or more ubiquitin moieties are added to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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