CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61360

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g61360 836257 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.63 78.1 At4g38230 829980 CPK26 member of Calcium Dependent Protein Kinase S.X. H.G.
0.57 73.8 At2g45310 819139 GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4) UDP-D-glucuronate 4-epimerase S.X. H.G.
0.50 65.3 At4g20160 827762 - F:unknown;P:unknown;C:chloroplast;MOFBPVA S.X. H.G.
0.46 59.8 At5g25340 832606 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;MPO S.X. H.G.
0.33 38.1 At4g07960 826301 ATCSLC12 (CELLULOSE-SYNTHASE LIKE C12) encodes a gene similar to cellulose synthase S.X. H.G.
0.26 24.4 At2g18180 816331 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:unknown;MPFO S.X. H.G.
0.18 11.4 At1g02000 839289 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-D-glucuronate 4-epimerase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
206.5 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
166.0 100.0 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
165.9 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
164.1 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
131.2 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
130.4 99.9 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
124.5 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
109.3 99.9 E-MEXP-1138-raw-cel-1432772682
103.8 99.9 E-MEXP-1138-raw-cel-1432772938
98.5 99.9 E-MEXP-1138-raw-cel-1432772554
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 8e-8 57 At5g07730 830666 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
0.03 2e-2 40 At3g04500 819606 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB C.G. S.X.
0.03 2e-2 40 At1g29220 839796 transcriptional regulator family protein F:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
0.01 8e-2 38 At5g25590 832634 - F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVA C.G. S.X.
0.02 8e-2 38 At4g22670 828363 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) F:binding;P:response to cadmium ion;C:unknown;MBOPFVA C.G. S.X.
0.02 8e-2 38 At3g25100 822101 CDC45 (cell division cycle 45) Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45 C.G. S.X.
0.03 8e-2 38 At3g18800 821413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.03 8e-2 38 At3g44020 823519 thylakoid lumenal P17.1 protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PO C.G. S.X.
0.01 8e-2 38 At2g41700 818768 ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter F:ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity;P:unknown;C:plasma membrane;BOMAFPV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max Gma.2777.1.S1_at BQ785406 - - 1e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig8457_at Contig8457 - - 2e-5 At2g22080 unknown protein C.G. S.X.
0.03 2e-1 38 Oryza sativa Os07g0475000 AK068238.1 - Conserved hypothetical protein 7e-3 At3g15357 unknown protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.88241.1.A1_at CV275086 hypothetical protein - 8e-1 At5g61360 unknown protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.26330.1.S1_at CA689895 - - 2e-1 At5g47030 ATP synthase delta' chain, mitochondrial C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.4530.1.A1_at CK827450 hypothetical protein LOC100276667 - 1e-1 At5g33898 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage