CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g61090

Gene name nucleic acid binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.66 80.1 At5g61090 836230 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:chloroplast;MBOPFVA S.X. H.G.
0.79 89.1 At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family S.X. H.G.
0.75 86.9 At3g58860 825055 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.72 84.8 At1g10890 837632 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA S.X. H.G.
0.71 84.2 At2g06960 815265 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;PBOFM S.X. H.G.
0.70 83.5 At4g17130 - - - S.X. H.G.
0.69 82.9 At2g24255 816960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV S.X. H.G.
0.68 82.2 At5g46310 834674 WRKY family transcription factor F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:unknown;FP S.X. H.G.
0.67 81.6 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
443.4 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
239.2 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
216.5 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
191.8 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
175.1 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
165.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
156.5 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
149.7 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
147.9 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 2e-3 44 At5g61120 836233 - F:unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.01 5e-1 36 At5g59730 836094 ATEXO70H7 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H7) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.02 5e-1 36 At5g38920 833884 nucleic acid binding / ribonuclease H F:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 5e-1 36 At4g01180 828058 XH/XS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MOBFPAV C.G. S.X.
0.01 5e-1 36 At4g29000 829021 tesmin/TSO1-like CXC domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;OMPF C.G. S.X.
0.01 2e+0 34 At5g13150 831154 ATEXO70C1 (exocyst subunit EXO70 family protein C1) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. C.G. S.X.
0.01 2e+0 34 At5g16630 831525 RAD4 F:damaged DNA binding;P:nucleotide-excision repair;C:nucleus, chloroplast;MFOP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.10780.1.S1_at BU964855 - - 9e-1 At5g61090 nucleic acid binding C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig9830_s_at Contig9830 - - 4e+0 At4g09970 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os.54408.1.S1_at - - - 0 C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.209695.1.S1_at pmrna19135 hypothetical protein - 9e-7 At1g60690 aldo/keto reductase family protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum Ta.8643.1.S1_at CA610845 - - 5e-2 At2g22807 - C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1617435_at CF604886 hypothetical protein LOC100248075 - 2e-5 At3g13990 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.5768.1.A1_at AI649523 hypothetical protein LOC100279614 - 6e+0 At3g63050 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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