Gene omics information

Query gene ID At5g60890
Gene name MYB34 (MYB DOMAIN PROTEIN 34)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3745.0At5g60890836210MYB34 (MYB DOMAIN PROTEIN 34)Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.S.X.H.G.
0.5267.4At3g15950820839NAI2Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots.Protein is localized to ER bodies- an endoplasmic reticulum derived structure. Loss of function mutations lack ER bodies.S.X.H.G.
0.5065.3At3g09260820082PYK10Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.S.X.H.G.
0.5065.3At3g16420820890PBP1 (PYK10-BINDING PROTEIN 1)The PBP1(PYK10-binding protein 1) assists the PYK10 (beta-glucosidase complex) in its activity and may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.S.X.H.G.
0.5065.3At3g16460820894jacalin lectin family proteinF:copper ion binding;P:response to cold;C:cytosol, nucleus, membrane;BOMPFVAS.X.H.G.
0.4862.5At3g16390820886NSP3 (NITRILE SPECIFIER PROTEIN 3)Encodes a nitrile-specifier protein NSP3. NSP3 is one out of five (At3g16400/NSP1, At2g33070/NSP2, At3g16390/NSP3, At3g16410/NSP4 and At5g48180/NSP5) A. thaliana epithiospecifier protein (ESP) homologues that promote simple nitrile, but not epithionitrile or thiocyanate formation.S.X.H.G.
0.4659.8At3g20370821582meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PMOFS.X.H.G.
0.4050.8At4g27860828899integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;POMBFS.X.H.G.
0.3032.1At4g37410829895CYP81F4member of CYP81FS.X.H.G.
0.2930.3At1g35250840414thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
293.8100.0GSM184151ATR1_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
257.1100.0GSM183515ATR1_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
39.599.8GSM133139S1500_4H_AGSE5688AtGenExpress: Response to sulfate limitation
30.499.7GSM152139Col-0 drought 3GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
28.399.7GSM152135Col-0 drought 1GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
27.799.7GSM133125S0_2H_AGSE5688AtGenExpress: Response to sulfate limitation
27.299.7GSM152137Col-0 drought 2GSE6583Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
26.099.7GSM133126S0_2H_BGSE5688AtGenExpress: Response to sulfate limitation
25.499.6GSM184509Pericycle root cells 2hr continuous KNO3 treated, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
24.499.6GSM133140S1500_4H_BGSE5688AtGenExpress: Response to sulfate limitation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.152e-30133At1g18570838438MYB51 (MYB DOMAIN PROTEIN 51)Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis.C.G.S.X.
0.164e-26119At1g74080843748MYB122 (MYB DOMAIN PROTEIN 122)Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122).C.G.S.X.
0.111e-1687At5g07690830662ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29)Encodes a putative transcription factor (MYB29).C.G.S.X.
0.083e-1169At5g23000832364MYB37 (MYB DOMAIN PROTEIN 37)"Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family."C.G.S.X.
0.105e-1065At3g49690824131MYB84 (MYB DOMAIN PROTEIN 84)"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. "C.G.S.X.
0.092e-963At5g57620835866MYB36 (myb domain protein 36)Encodes a putative transcription factor (MYB36).C.G.S.X.
0.092e-963At5g54230835511MYB49 (myb domain protein 49)Encodes a putative transcription factor (MYB49).C.G.S.X.
0.058e-961At3g28470822477TDF1 (DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1)Member of the R2R3 factor gene family.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.103e-344Glycine maxGmaAffx.5013.1.S1_atBM092559--2e-13At1g22640MYB3 (MYB DOMAIN PROTEIN 3)C.G.S.X.
0.028e-134Hordeum vulgareContig6250_atContig6250--1e+0At5g16830SYP21 (SYNTAXIN OF PLANTS 21)C.G.S.X.
0.032e-138Oryza sativaOs02g0641900AK108621.1-Myb7 protein (Fragment)2e-7At1g74080MYB122 (MYB DOMAIN PROTEIN 122)C.G.S.X.
0.113e-654Populus trichocarpaPtpAffx.216089.1.S1_atpmrna30658hypothetical protein-7e-19At4g28110AtMYB41 (myb domain protein 41)C.G.S.X.
0.045e-136Triticum aestivumTaAffx.113491.1.S1_atCA610965--7e-5At2g36890RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)C.G.S.X.
0.045e-444Vitis vinifera1619454_atCF568815--1e-55At4g38620MYB4C.G.S.X.
0.067e-134Zea maysZm.14527.1.A1_atBI542536R2R3MYB-domain protein-5e-15At3g01140MYB106 (myb domain protein 106)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0002213A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism.
XGO:0009753A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
XGO:0000162The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.
XGO:0009759The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan.
SGO:0010438A change in the state or activity of a cell (in terms of enzyme production, gene expression, etc.) as a result of deprivation of sulfur.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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