Gene omics information

Query gene ID At5g60850
Gene name OBP4
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g60850836206OBP4Encodes a zinc finger protein.S.X.H.G.
0.3235.7At1g71970843528unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMS.X.H.G.
0.2522.6At1g17970838377zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVS.X.H.G.
0.2014.4At3g19553821492amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:amino acid transport, transport;C:membrane;BMOFPAS.X.H.G.
0.2014.4At5g19140832034AILP1F:molecular_function unknown;P:response to aluminum ion, response to auxin stimulus;C:plasma membrane;BPOMFAVS.X.H.G.
0.1811.4At3g50830824247COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable.S.X.H.G.
0.135.8At3g47620823916AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.S.X.H.G.
0.051.1At5g24890832558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.299.8GSM128650Underwood_1-3_Cor-10e6-24h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
30.399.7GSM128654Underwood_1-7_DC3000-10e6-24h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
28.199.7GSM128649Underwood_1-2_Cor-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
24.299.6GSM131170AtGen_D-2_1-FL_REP1_ATH1GSE5617AtGenExpress: Light treatments
23.499.6GSM128676Underwood_1-29_DC3000-10e8-7h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
23.099.6GSM128675Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
22.899.6GSM128655Underwood_1-8_DC3000-10e6-24h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
18.399.5GSM131173AtGen_D-5_1-BL_REP1_ATH1GSE5617AtGenExpress: Light treatments
17.899.5GSM38670DSNPGSE2268Arabidopsis polysome microarray
17.699.5GSM131184AtGen_D-16_1-WS_REP1_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.171e-38161At3g21270821681ADOF2Encodes Dof zinc finger protein adof2.C.G.S.X.
0.174e-35149At1g51700841595ADOF1Encodes dof zinc finger protein (adof1).C.G.S.X.
0.122e-21103At3g50410824205OBP1 (OBF BINDING PROTEIN 1)Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development.C.G.S.X.
0.136e-1685At5g65590836685Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:chloroplast;POFC.G.S.X.
0.122e-1273At2g28510817399Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleolus;POMFBC.G.S.X.
0.078e-1271At5g62940836414Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POMFBC.G.S.X.
0.088e-1271At4g38000829956Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
0.121e-1067At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.172e-1997Glycine maxGmaAffx.27470.1.S1_atBG881300Dof7-7e-32At3g21270ADOF2C.G.S.X.
0.096e-857Hordeum vulgareContig13717_atContig13717--8e-22At2g37590Dof-type zinc finger domain-containing proteinC.G.S.X.
0.081e-965Oryza sativaOs02g0726300AB028132.1-Dof zinc finger protein9e-22At2g37590Dof-type zinc finger domain-containing proteinC.G.S.X.
0.131e-861Populus trichocarpaPtpAffx.203882.1.S1_x_atpmrna7667f-box family protein-2e-9At5g60850OBP4C.G.S.X.
0.103e-859Triticum aestivumTa.9366.2.S1_x_atCK212053Dof1-5e-20At2g37590Dof-type zinc finger domain-containing proteinC.G.S.X.
0.036e-444Vitis vinifera1615083_atCB914242--1e-38At4g24060Dof-type zinc finger domain-containing proteinC.G.S.X.
0.035e-238Zea maysZm.9762.1.A1_atCF629937hypothetical protein LOC100277958-3e-11At3g45610Dof-type zinc finger domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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