CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60760

Gene name 2-phosphoglycerate kinase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV S.X. H.G.
0.91 95.6 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. S.X. H.G.
0.90 95.1 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA S.X. H.G.
0.90 95.1 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.89 94.6 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.89 94.6 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.89 94.6 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO S.X. H.G.
0.89 94.6 At3g22500 821821 ATECP31 late embryogenesis abundant (LEA) protein S.X. H.G.
0.89 94.6 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At2g42560 818856 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;BOMPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
601.4 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
423.0 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
259.2 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
259.1 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
233.7 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
217.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
208.5 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
204.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
198.4 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
193.5 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 6e-135 482 At3g45090 823644 2-phosphoglycerate kinase-related F:unknown;P:unknown;C:unknown;BOMFPVA C.G. S.X.
0.01 3e-1 38 At5g36220 833619 CYP81D1 (CYTOCHROME P450 81D1) member of CYP81D C.G. S.X.
0.01 1e+0 36 At5g35430 833507 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOBF C.G. S.X.
0.01 1e+0 36 At2g30570 817606 PSBW (PHOTOSYSTEM II REACTION CENTER W) Encodes a protein similar to photosystem II reaction center subunit W. C.G. S.X.
0.01 1e+0 36 At1g20760 838666 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:plasma membrane;MBOFPVA C.G. S.X.
0.01 4e+0 34 At5g05190 830401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV C.G. S.X.
0.01 4e+0 34 At5g64650 836586 ribosomal protein L17 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMP C.G. S.X.
0.01 4e+0 34 At5g37210 833695 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-4 50 Glycine max GmaAffx.26500.1.S1_at BE657456 - - 3e-4 At3g45090 2-phosphoglycerate kinase-related C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig12155_at Contig12155 - - 2e-4 At5g15640 mitochondrial substrate carrier family protein C.G. S.X.
0.11 3e-15 85 Oryza sativa Os02g0819400 AK100921.1 - Globin-like family protein 2e-15 At5g60760 2-phosphoglycerate kinase-related C.G. S.X.
0.26 3e-48 194 Populus trichocarpa PtpAffx.137722.1.S1_at CX174412 hypothetical protein - 5e-49 At5g60760 2-phosphoglycerate kinase-related C.G. S.X.
0.04 3e-4 48 Triticum aestivum Ta.27912.2.S1_at BJ225147 - - 7e-5 At5g60760 2-phosphoglycerate kinase-related C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1616804_at CD798562 hypothetical protein LOC100267490 - 3e+0 At4g16200 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein C.G. S.X.
0.01 8e-3 42 Zea mays Zm.13935.1.S1_at U94494.1 teosinte branched1 - 3e+0 At3g49560 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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