CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60720

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At5g60720 836193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM S.X. H.G.
0.60 75.7 At2g46760 819289 FAD-binding domain-containing protein F:oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity;P:unknown;C:membrane;BOFPMA S.X. H.G.
0.46 59.8 At1g23460 838954 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.46 59.8 At5g26330 832702 plastocyanin-like domain-containing protein / mavicyanin, putative F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PF S.X. H.G.
0.40 50.8 At1g10800 837623 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
618.5 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
426.8 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
179.9 100.0 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
177.5 100.0 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
106.8 99.9 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
98.0 99.9 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
89.4 99.9 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
87.8 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
76.7 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
72.2 99.9 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 42 At4g03100 828092 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFP C.G. S.X.
0.01 7e-2 40 At3g02400 821210 forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MOFBPVA C.G. S.X.
0.01 7e-2 40 At3g18110 821336 EMB1270 (embryo defective 1270) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA C.G. S.X.
0.01 7e-2 40 At1g64430 842751 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PMO C.G. S.X.
0.01 3e-1 38 At4g04730 825808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 3e-1 38 At2g39690 818552 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PBMO C.G. S.X.
0.01 3e-1 38 At1g06420 837153 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 9e-2 40 Glycine max GmaAffx.83657.2.S1_at BU925917 - - 2e-3 At4g21570 unknown protein C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HA12N13u_s_at HA12N13u - - 5e-2 At1g54250 NRPB8A C.G. S.X.
0.01 3e-2 42 Oryza sativa Os02g0298000 9630.m01865 - - 2e-2 At5g08330 TCP family transcription factor, putative C.G. S.X.
0.06 6e-3 44 Populus trichocarpa Ptp.4703.1.S1_at CK099261 hypothetical protein - 1e-3 At5g60720 unknown protein C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.111882.1.S1_at CA631302 - - 4e-1 At5g64090 - C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1609842_at CB982197 - - 2e-1 At5g57750 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 7e+0 32 Zea mays Zm.6729.1.S1_at BM080531 hypothetical protein LOC100273464 /// lysine ketoglutarate reductase trans-splicing related 1 - 6e-34 At1g67850 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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