CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60660

Gene name PIP2

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV S.X. H.G.
0.75 86.9 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). S.X. H.G.
0.57 73.8 At5g47450 834794 AtTIP2 Tonoplast intrinsic protein, transports ammonium (NH3) and methylammonium across the tonoplast membrane, gene expression shows diurnal regulation and is upregulated by ammonium (NH3). S.X. H.G.
0.55 70.6 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.48 62.5 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO S.X. H.G.
0.40 50.8 At1g65310 842839 XTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17) putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.6 99.9 GSM131195 AtGen_D-29_2-BS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
62.2 99.8 GSM266670 Arabidopsis, root cells, cortex, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
56.8 99.8 GSM131209 AtGen_D-43_3-PS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
52.3 99.8 GSM131213 AtGen_D-47_3-US_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
52.1 99.8 GSM131192 AtGen_D-25_2-DS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
52.1 99.8 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
51.7 99.8 GSM131215 AtGen_D-17_2-DL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
51.6 99.8 GSM131197 AtGen_D-31_2-US_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
50.7 99.8 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
50.5 99.8 GSM266671 Arabidopsis, root cells, cortex, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 2e-49 196 At4g35100 829662 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) a member of the plasma membrane intrinsic protein PIP. functions as aquaporin. Salt-stress-inducible MIP C.G. S.X.
0.44 1e-47 190 At3g53420 824510 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev C.G. S.X.
0.34 6e-34 145 At2g39010 818487 PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E) F:water channel activity;P:transport, response to nematode;C:plasma membrane, membrane;BPMOFAV C.G. S.X.
0.32 4e-32 139 At2g37180 818294 RD28 (RESPONSIVE TO DESICCATION 28) a member of the plasma membrane intrinsic protein PIP2. functions as aquaporin and is involved in dessication. C.G. S.X.
0.39 4e-32 139 At2g37170 818293 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev C.G. S.X.
0.38 9e-21 101 At2g16850 816186 PIP2 F:water channel activity;P:transport;C:membrane;BPMOFAV C.G. S.X.
0.32 8e-18 91 At3g54820 824647 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 2e-22 107 Glycine max Gma.11116.4.S1_s_at CD408430 - - 4e-39 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) C.G. S.X.
0.20 3e-25 115 Hordeum vulgare Contig1223_at Contig1223 aquaporin - 6e-38 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) C.G. S.X.
0.22 2e-23 111 Oryza sativa OsAffx.24678.2.S1_at - - - 0 C.G. S.X.
0.36 8e-25 115 Populus trichocarpa PtpAffx.7681.1.A1_at CV271115 - - 7e-38 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) C.G. S.X.
0.30 6e-28 125 Triticum aestivum Ta.28728.2.S1_x_at BJ283978 - - 1e-39 At2g37180 RD28 (RESPONSIVE TO DESICCATION 28) C.G. S.X.
0.28 3e-36 151 Vitis vinifera 1618231_at AF141642.1 - - 8e-50 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) C.G. S.X.
0.28 1e-33 143 Zea mays Zm.608.1.S1_at AF326496.1 plasma membrane integral protein ZmPIP2-7 - 9e-21 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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