CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60620

Gene name phospholipid/glycerol acyltransferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.37 45.0 At5g60620 836183 phospholipid/glycerol acyltransferase family protein F:acyltransferase activity;P:triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process;C:plasma membrane, membrane;MOBPF S.X. H.G.
0.89 94.6 At5g64500 836571 membrane protein-related F:molecular_function unknown;P:biological_process unknown;C:membrane;BOFMAP S.X. H.G.
0.57 73.8 At3g59950 825165 autophagy 4b (APG4b) F:peptidase activity;P:autophagy;C:chloroplast;MOFP S.X. H.G.
0.57 73.8 At4g05160 825864 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. S.X. H.G.
0.50 65.3 At3g05010 819662 transmembrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:membrane;MPBO S.X. H.G.
0.46 59.8 At3g51040 824268 RTH (RTE1-HOMOLOG) Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.9 99.3 GSM265413 Arabidopsis, whole roots, -Fe, replicate 3 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.9 99.3 GSM265412 Arabidopsis, whole roots, -Fe, replicate 2 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
11.9 99.3 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
9.4 99.1 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.4 99.0 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.7 98.9 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.4 98.8 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
7.1 98.8 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
6.6 98.7 GSM133767 Lindsey_1-19_torpedo-basal_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
6.1 98.5 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-2 40 At1g78390 844175 NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. C.G. S.X.
0.02 1e-1 38 At3g61180 825290 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVB C.G. S.X.
0.01 6e-1 36 At2g24000 816934 scpl22 (serine carboxypeptidase-like 22) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB C.G. S.X.
0.01 6e-1 36 At1g61380 842432 SD1-29 (S-DOMAIN-1 29) F:carbohydrate binding, protein kinase activity, kinase activity;P:protein amino acid autophosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g08680 830769 ATP synthase beta chain, mitochondrial, putative Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level. C.G. S.X.
0.01 2e+0 34 At5g46570 834700 BSK2 (BR-SIGNALING KINASE 2) Encodes BR-signaling kinase 2 (BSK2), one of the three homologous BR-signaling kinases (BSK1, AT4G35230; BSK2, AT5G46570; BSK3, AT4G00710). Mediates signal transduction from receptor kinase BRI1 by functioning as the substrate of BRI1. Plasma membrane localized. C.G. S.X.
0.01 2e+0 34 At5g46340 834677 O-acetyltransferase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO C.G. S.X.
0.01 2e+0 34 At5g35917 833580 CYP79A3P a pseudogene with cytochrome P450 domain C.G. S.X.
0.01 2e+0 34 At5g06610 830549 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 1e-36 155 Glycine max GmaAffx.875.4.S1_at BQ273354 - - 7e-37 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.25 1e-21 103 Hordeum vulgare Contig7444_at Contig7444 - - 4e-21 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.39 6e-18 93 Oryza sativa Os07g0531600 AK067845.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-18 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.59 2e-115 416 Populus trichocarpa PtpAffx.204348.1.S1_at pmrna8549 hypothetical protein - 4e-113 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.23 8e-25 115 Triticum aestivum Ta.7526.1.S1_a_at BE412144 - - 1e-24 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.32 7e-41 167 Vitis vinifera 1618170_at CD011825 hypothetical protein LOC100243463 - 2e-40 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
0.17 3e-19 95 Zea mays Zm.18069.1.S1_at CF634514 - - 1e-18 At5g60620 phospholipid/glycerol acyltransferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006651 The chemical reactions and pathways resulting in the formation of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues.
C GO:0019432 The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol.
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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