CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g60520

Gene name late embryogenesis abundant protein-related / LEA protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g60520 836173 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.90 95.1 At5g66280 836760 GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1) GDP-D-mannose 4,6-dehydratase S.X. H.G.
0.83 91.4 At1g14080 837968 FUT6 (FUCOSYLTRANSFERASE 6) member of Xyloglucan fucosyltransferase family S.X. H.G.
0.81 90.4 At3g04320 819587 endopeptidase inhibitor F:endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.79 89.1 At4g01240 827909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At4g37160 829870 sks15 (SKU5 Similar 15) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.76 87.4 At1g33280 840223 ANAC015 (Arabidopsis NAC domain containing protein 15) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.73 85.5 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P S.X. H.G.
0.72 84.8 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
0.72 84.8 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
401.4 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
387.3 100.0 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
336.4 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
300.6 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
231.4 100.0 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
201.7 100.0 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
189.8 100.0 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
175.0 100.0 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
124.4 99.9 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
110.1 99.9 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.31 2e-37 157 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA C.G. S.X.
0.02 3e-2 40 At5g07170 830608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 3e-2 40 At5g02630 831851 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOF C.G. S.X.
0.02 1e-1 38 At5g22930 832357 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 1e-1 38 At4g13760 827010 polygalacturonase F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA C.G. S.X.
0.01 1e-1 38 At2g01320 814660 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:chloroplast;BOMFAPV C.G. S.X.
0.01 1e-1 38 At2g42600 818860 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2) Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.63633.1.S1_at BQ453430 - - 1e-37 At5g25752 RBL11 (RHOMBOID-LIKE PROTEIN 11) C.G. S.X.
0.03 4e+0 32 Hordeum vulgare HVSMEi0016B10r2_at HVSMEi0016B10r2 - - 1e-1 At2g25500 - C.G. S.X.
0.02 1e+0 36 Oryza sativa Os.41805.1.S1_at - - - 0 C.G. S.X.
0.24 5e-8 59 Populus trichocarpa PtpAffx.205052.1.S1_at pmrna10006 hypothetical protein - 3e-8 At5g60520 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.105405.1.S1_at CA734836 - - 2e+0 At5g55570 unknown protein C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1614195_at CD798878 similar to peroxisomal targeting signal 1 receptor; PTS1 receptor; Pex5p - 1e+0 At2g18270 unknown protein C.G. S.X.
0.04 9e-1 34 Zea mays Zm.52.1.A1_at AB021175.1 root cap protein 1 - 2e+0 At5g60520 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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